Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00295 ATGGATCCACCACTTATCTCCATATCCGCATCGAATTTCATCCAACCGAATTATCCTGACTCGTTAGAGTCTTTATCACCACGATCACAACCACCACCACGATCACGAGAACCGATGAACGATGAGCCTCTAGCTAATGTCCCAAACGCCAAGCTTCGTCTTATGTGCAGCTACGGAGGCCATATAATGCCGCGTCCTCACGATAAATCCCTACTTTATGTTGGTGGTGATACTCGAATAGTGGTGATCGACCGTAGCTCTTCGTTGAAAGACCTATGTTCGCGCCTTTCGCGGACAATTCTTAATGGAAGACCTTTTACTCTCAAGTACCAGCTTCCAAATGAAGACCTTGACAGCCTCATCACTGTCACGACAGATGAAGATCTCGACAACATGATCGAAGAGTATGATCGAATATCATCTTCATCTTCGACCATGAAATCTTCTTCGAGACTCAGAGTGTTTCTGTTCTTCACAAAACCAGAGTCAACACTCTCAATGGGATCACTCCTTGATGATGCGAAATCCGAGACATGGTTTGTTGATGCACTCAACAACTCGGGGATTCTCTCGAGGGGTGTCTCGGATTCAGCAGGAGATTCTTTCGTGAATCTTGATAATGTTCCTGCTAGCGATTCAAGCAATAACTTGGAAGCACAAGGTGTTGGAACAGCAGTAGAGACATTGAACCTTCTCGAAAACAGCAGCAGCAGCAACAACAATGTTAAGAATGTTTTTGATGTTGTTAATGTTGTGAACTCAACACCTGGTTCACCAATGCTGGAAAATAGTCCATCTTCATCTTCTCTGTCTACTTCAATGGCGAATTTGCCTCCGATTCGTGTCCGTGTTGACGAAACCGTTGGTAGTAGGCTTCAACAAGAGAATAAAGTTGCAATGAAGCAAGATGATGGATTTGTTGTATCTTCTGCTAATGTGGCTATGGCTGCAATTCCTGCAACATTGACTATGGCTTCAGCTGGTGTTGTTACTACTGCTGTTACTAGTGATGTTAATGTGAATAGGGTTGTTTCTGATGATGAGAGATTAGAGTATGGAGGAGTCATTGGAGCTCGAAAACCGCCTTTACCGTTGCAGCTTGTTCAGCCGAGGACTAGTGGTGGTTTGAGTCTTCCATCACCAGATTCAGTCACAAGTGATACTAGTAGTATTGCATCTACAAATTCTTTCTCCAAAATCATTTATCATCAAGAACAAGTCCAAATCCAACCTACAAACATAGACACCAAACCTCAACCTCAAGATTCTAGTTACATGTTACCTCAACAAGTGGATCAAAACCAACAACTCCAACCACCACAACAACAACAACAATTTGTTCATTCCAACACTCACTATATCCACCACCCTACATCCACAAATCAAGTTCCAATCCCATCATACTACCAAGTCTATCCCCCACAATCACAACAACAACAGCTTCACAATCCAATTGCTCAACAACAATATCCAATCTATGTAATGCCAATTGGAACCACACAACAACAACCATACAACATGACATTGCAACATTCTCTAAGTGACCCTAATGTTGTGACCTCTATTAGGCCACTAATACCTCAAAGTGGAACTCCACCAATTTACCCTAATAAATCACCTAACCCTAATGTGCCATCCAATTCAACATTTGTTCAAGTTCCTTCAAATCAATTTCAACAACAATTTGTTGGTTTGCCTCAATTCCATCATCAACCACAACATCCAATCAATGTAGCTCCTTCTAGTGGTACTAACTATGGTTATGAGTATGGTGGCAATGTGGAAGGTCAAGTGTACTATACTCAACAAACAACTAATGCTCCTTTGGTTACTCAGTACCAATCCATGACCCCTGCAGCTGCTGCTGCAGCATTATCTGATGCTTCAAATCAGTTTCCTGCAGATAATGTTCAGCAATCAAATAGAACTTCGCAGCCGGTTTAA 1944 0.4218 MDPPLISISASNFIQPNYPDSLESLSPRSQPPPRSREPMNDEPLANVPNAKLRLMCSYGGHIMPRPHDKSLLYVGGDTRIVVIDRSSSLKDLCSRLSRTILNGRPFTLKYQLPNEDLDSLITVTTDEDLDNMIEEYDRISSSSSTMKSSSRLRVFLFFTKPESTLSMGSLLDDAKSETWFVDALNNSGILSRGVSDSAGDSFVNLDNVPASDSSNNLEAQGVGTAVETLNLLENSSSSNNNVKNVFDVVNVVNSTPGSPMLENSPSSSSLSTSMANLPPIRVRVDETVGSRLQQENKVAMKQDDGFVVSSANVAMAAIPATLTMASAGVVTTAVTSDVNVNRVVSDDERLEYGGVIGARKPPLPLQLVQPRTSGGLSLPSPDSVTSDTSSIASTNSFSKIIYHQEQVQIQPTNIDTKPQPQDSSYMLPQQVDQNQQLQPPQQQQQFVHSNTHYIHHPTSTNQVPIPSYYQVYPPQSQQQQLHNPIAQQQYPIYVMPIGTTQQQPYNMTLQHSLSDPNVVTSIRPLIPQSGTPPIYPNKSPNPNVPSNSTFVQVPSNQFQQQFVGLPQFHHQPQHPINVAPSSGTNYGYEYGGNVEGQVYYTQQTTNAPLVTQYQSMTPAAAAAALSDASNQFPADNVQQSNRTSQPV 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00295 647 MobiDBLite consensus disorder prediction 8 30 - -
Vivi4g00295 647 MobiDBLite consensus disorder prediction 629 647 - -
Vivi4g00295 647 Gene3D - 72 157 - -
Vivi4g00295 647 PANTHER OS05G0427100 PROTEIN-RELATED 18 502 - -
Vivi4g00295 647 SMART PB1_new 66 157 IPR000270 GO:0005515
Vivi4g00295 647 MobiDBLite consensus disorder prediction 625 647 - -
Vivi4g00295 647 ProSiteProfiles PB1 domain profile. 51 157 IPR000270 GO:0005515
Vivi4g00295 647 MobiDBLite consensus disorder prediction 370 390 - -
Vivi4g00295 647 MobiDBLite consensus disorder prediction 1 45 - -
Vivi4g00295 647 Pfam PB1 domain 67 157 IPR000270 GO:0005515
Vivi4g00295 647 CDD PB1_UP2 55 157 - -
Vivi4g00295 647 SUPERFAMILY CAD & PB1 domains 67 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00295 Vivi-Chr4 6598826 6601686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00295 40 186 MAP Kinase Kinase Kinase AT5G57610 42.568 1.17e-27 117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03665 1 78591870 78594753 Vivi4g00295 4 6598826 6601686 ECH
Vivi4g00295 4 6598826 6601686 Vivi4g00295 4 6598826 6601686 ECH