Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g06170 ATGGAGAAGGAAGACGAGGAGAATGGACCTGAAGAATCAACTAATGCTGATGTTAGTGTTTCTTTGAATGAAATTTCTAACAATCAAGCTTATCCATACGAAGATGTTAATGCTATTCCAAACATGTACGAAATCGGCACTTCGAAACCGGGGACCGAATTAGTTCATAGTACTTATGAACAGAAGACTGCCAACAGATATATTGACAATCAAGGGAAAGCTTTCAAGAAGCCAAACAAGGTTCTCCACTGTCCTCGCTGCAATTGTTTGGACACAAAGTTTTGCTATTTCAACAATTACAATGTTAACCAACCAAGGCACTTCTGCAAAAATTGTCATAGGTATTGGATAGCTGGGGGAGAAATTTGGAACGTTCCTATTGGAATCGGTAAGCATAGAAATAAGCATTTGCCTTTGAAGAACATACCTATCACACAAACAGATTCTGACCCTACTAGTCACAAGGGGAAGTTCCTCTTAGTGAACCACTAG 492 0.3943 MEKEDEENGPEESTNADVSVSLNEISNNQAYPYEDVNAIPNMYEIGTSKPGTELVHSTYEQKTANRYIDNQGKAFKKPNKVLHCPRCNCLDTKFCYFNNYNVNQPRHFCKNCHRYWIAGGEIWNVPIGIGKHRNKHLPLKNIPITQTDSDPTSHKGKFLLVNH 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g06170 163 Pfam Dof domain, zinc finger 80 136 IPR003851 GO:0003677|GO:0006355
Vivi3g06170 163 ProSiteProfiles Zinc finger Dof-type profile. 82 136 IPR003851 GO:0003677|GO:0006355
Vivi3g06170 163 PANTHER CYCLIC DOF FACTOR 2 44 145 IPR045174 GO:0003700|GO:0006355
Vivi3g06170 163 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g06170 Vivi-Chr3 156739836 156740327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g06170 48 135 C2C2-Dof Transcription Factor Family AT3G47500 54.167 1.77e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi3g06170 zf-Dof 8.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g06170 - - vvo:131659237 356.681