Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04410 ATGCAGAAAACTACAATATTCCTCACACTCCTCTTCCACCTTTTTTCAACCATAACCTCAAAATCAACAATCGAACCATGCACAAACTCCGACTCATGCAACGCTCTACTCGGCTACACCCTCTACACAGACCTCAAAGTCTCCGAACTCTCCTCCCTCTTCCAAATCGACCCTATCTCTCTCCTAACCGCCAATGCCATCGACATCTCTTACCCTGACGTGGAACACCACATCCTCCCTTCCAAACTCTTCCTCAAAATCCCAATCTCATGCTCCTGTGTTGACGGGATTCGCAAATCCGTTTCCACGAACTACAAAATCCGTCCCTCGGATACTCTCTCCACCATTGCTGACTCTGTTTACGGTGGTTTGGTTTCTTCTGACCAGCTCAAAGAGGCTAACTCTATTTCTGATCCGTCTGTTCTTGATGTTGGACAGAGCCTTGTTGTTCCGCTTCCTTGTACTTGTTTCAATGGCTCTGATAATGCTTTGCCTGCTATTTATTTGTCGTATGTTGTTCAGCCGCTTGATAGTTTGAGTTATATTGCGGCGAGGTATTTTACTACTCTTACTGATTTGATGAATGTTAATGCTATGGGGAGTACTTCTATCTCTGATGGTGATATTCTTGCTATTCCTATCCCGGCATGTGCTTCAAATTTTCCGAAATATGCTTCTGATTTCGGCTTGCTTGTCCCGAATGGAAGTTATGCCATTACAGCCGGTCACTGTGTGCAATGTAGCTGTGGACCCCGAAACTTAAATTTGTACTGTATGCCGGCTTCTCTAGCTGTTTCTTGCTCCAGCATGCAATGCAAAAGCAGCAATCTTATGCTTGGCAATGTTACCGTGCAACAGACTGGTGGTGGTTGTAATGTGACTTCTTGCAGTTATGATGGTCTTGTTAATGGCACCATAGCGACAATGTTGACCCCGTCTCTTCAGCCTCGATGCCCAGGGACACAGCAATTTCCTCCTCTTATCGCCCCACCTACAACTGTTACGAGAGAATCAGTATTTGCACCGGCACCCTCGCCATCATCGCTGTTCGATGGAACTGATGGGAGATCACCCAAACCCTCTGTGGTGCCTTCAACAGGATTTACTCCGGCTAATGGTCCTGTTAGTGGAATTTCTTCCGGTGCTTCTGCCGCATGCTCCTTGGTGAAACCATTACCCACTTTGACGGTTCCACTCGTGTTATTAGTTGTCAAGTTGATGATCCCTGTAGCATTGTAA 1239 0.4625 MQKTTIFLTLLFHLFSTITSKSTIEPCTNSDSCNALLGYTLYTDLKVSELSSLFQIDPISLLTANAIDISYPDVEHHILPSKLFLKIPISCSCVDGIRKSVSTNYKIRPSDTLSTIADSVYGGLVSSDQLKEANSISDPSVLDVGQSLVVPLPCTCFNGSDNALPAIYLSYVVQPLDSLSYIAARYFTTLTDLMNVNAMGSTSISDGDILAIPIPACASNFPKYASDFGLLVPNGSYAITAGHCVQCSCGPRNLNLYCMPASLAVSCSSMQCKSSNLMLGNVTVQQTGGGCNVTSCSYDGLVNGTIATMLTPSLQPRCPGTQQFPPLIAPPTTVTRESVFAPAPSPSSLFDGTDGRSPKPSVVPSTGFTPANGPVSGISSGASAACSLVKPLPTLTVPLVLLVVKLMIPVAL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04410 412 CDD LysM 105 150 IPR018392 -
Vivi3g04410 412 SUPERFAMILY LysM domain 104 152 IPR036779 -
Vivi3g04410 412 ProSiteProfiles LysM domain profile. 169 212 IPR018392 -
Vivi3g04410 412 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 8 322 - -
Vivi3g04410 412 SUPERFAMILY LysM domain 169 214 IPR036779 -
Vivi3g04410 412 Gene3D LysM domain 160 221 IPR036779 -
Vivi3g04410 412 CDD LysM 170 212 IPR018392 -
Vivi3g04410 412 ProSiteProfiles LysM domain profile. 103 150 IPR018392 -
Vivi3g04410 412 Pfam LysM domain 171 213 IPR018392 -
Vivi3g04410 412 Pfam LysM domain 105 151 IPR018392 -
Vivi3g04410 412 Gene3D LysM domain 99 159 IPR036779 -
Vivi3g04410 412 SMART LysM_2 104 151 IPR018392 -
Vivi3g04410 412 SMART LysM_2 170 213 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04410 Vivi-Chr3 79364303 79366612 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04410 6 387 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 69.251 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04410 - - gmx:100808966 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04410 3 79364303 79366612 Vivi3g04410 3 79364303 79366612 ECH