Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03902 ATGGGTTTATCTTCTCTTCACGTCTGCAATATGGATTCATCTGCAGATCACTGGTTGCAGGGCACAATTCACGATGAGTCAGGAATGGATTCATCTTCACCATTATCTGGTGACATGCTAACATGTTCAAGACCATCCTCCATGATAGATCAAAGGAGGCTAAGACCACCACATGACCTGTCTCTAAAATGTCCAAGATGTGATTCAACTCACACCAAATTCTGCTACTACAACAACTACAGTCTCTCTCAGCCTAGGTACTTCTGCAAGACTTGTAGAAGGTATTGGACCAAAGGAGGAACCCTAAGAAACATTCCTGTTGGTGGAGGTTGTAGAAAAAACAAGAAAGTTTCTTCCAAAAAACCTAATGATAATATTCAAAATCATATTCAAAACCAACAACCTCAACAAGGATCTTCTTATTCATACCATCATCATAATCACAACAACAATAACCCTAAGGATCTTCATCTTTCTTTCCCTGATGTGCAATTCTCTCACCTTAGTAACTTACTAGGGAGTAGTACTTCTGGTGCATTAGGAAACCCTAATTTCAATGCTTGCATGCTTGAGAATCCTAGGCCTATTGATTTCATGATGGAGAGTAAACTAGAAGGCATAATTGGAAGTAGCTCTAGGAATTTTGATAACTTTTTCGGAAACAATGATCACATGAGTATGAACATGGGTGTTGGAGACATGATGAATGGTCAAAATCAAAATGTGCTTCAATTGCAACAGAATTTCCATTCCTCATTTGGTGGCATGTCATCATCATTTGATGGAAACAATAACAATGGAGGTTATTTAATGGATTCTTGTCAAAGACTCATGCTTCCATATGATGCTCATGATGAGGATCATAATGGTTCAATTGATGTGAAACCAAACCCTAAGTTACTCTCACTTGAATGGCAACAAGATCAAGGTTGCTCTGATGCTGGATATGGATCATGGAGTGGCATGATGAATGGTTATGGATCCTCCACAATAAACCCTTTGATCAACGGCTGA 1014 0.3895 MGLSSLHVCNMDSSADHWLQGTIHDESGMDSSSPLSGDMLTCSRPSSMIDQRRLRPPHDLSLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKPNDNIQNHIQNQQPQQGSSYSYHHHNHNNNNPKDLHLSFPDVQFSHLSNLLGSSTSGALGNPNFNACMLENPRPIDFMMESKLEGIIGSSSRNFDNFFGNNDHMSMNMGVGDMMNGQNQNVLQLQQNFHSSFGGMSSSFDGNNNNGGYLMDSCQRLMLPYDAHDEDHNGSIDVKPNPKLLSLEWQQDQGCSDAGYGSWSGMMNGYGSSTINPLING 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03902 337 MobiDBLite consensus disorder prediction 123 158 - -
Vivi3g03902 337 ProSitePatterns Zinc finger Dof-type signature. 64 100 IPR003851 GO:0003677|GO:0006355
Vivi3g03902 337 MobiDBLite consensus disorder prediction 111 158 - -
Vivi3g03902 337 ProSiteProfiles Zinc finger Dof-type profile. 62 116 IPR003851 GO:0003677|GO:0006355
Vivi3g03902 337 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 51 238 IPR045174 GO:0003700|GO:0006355
Vivi3g03902 337 Pfam Dof domain, zinc finger 61 116 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03902 Vivi-Chr3 67597872 67600221 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03902 1 330 C2C2-Dof Transcription Factor Family AT5G62940 40.625 1.00e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi3g03902 zf-Dof 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03902 - - gmx:778107 415.231