Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02911 ATGTTCCAACAAAGACTTAACAATAATATTACTAGTAGCGAGCTAGATCAAATGTTGCATATGCTATCCTCTTCTTCTTTTTCTAATCCCATGCCATTCTCAACAACTTCAATGGACCAATCAAATTCCAAGTGGAAACCACATGTTGAAATAGCTCCGAATTGTCCTCGTTGCGCTTCGACAAACACTAAATTCTGTTACTACAATAATTACAGCCTCTCGCAGCCTCGGTATTTCTGTAAAGGCTGTAGGCGTTATTGGACGAAAGGCGGCTCTCTTCGAAATGTCCCTGTTGGAGGTGGCTGTCGCAAACATCGTCGTGGAAGGGTGGTCAGAAATTCACAAACTGGCCACCTTTCCACGGATGGCTCTGACTCTGTTGACGGTGATCAACAGAATCAAAATAATGTTTCACGCGATATAGATATGGCCGTTGTTTTCGCCAAATTCTTAAACCAAAACACAAGTAGTACTCATCATGGTGATCATGAGGAAATAGAAACTGAGAGTGAGGCTAACAATAATAATGGATCAACTTCTTCCAATAATATGAACAATTTGTCGACGACACCGGACAGCATTGAAACTGAGAATGATGCAGTATTCCAGCCTGATGTAGTCGTTGTAAATGGGGATCCTTTTGATCCGGAATTGAGTTTGAGTGAGTTTGACGGGTTCCTGGGTGTTGATGAAGATGTGGTTCAAGATGTTCTATGGCCTGATTCTTCAGATGCTATGATGGTGTCAACATGGCAGCAACAACAACCACCATCCATGATGCAAATGGAGATGGATTACTCGATGCCATTACCGTTGCCATTGAATGAGGGTGATAATCATGATCAATTATTATTACCTGTTACTGTCAATTCAAATTCTGCTAGTGGCAATTTGATAAATGAGAGTTGGAACACTTCTTGGGATTCTTTTGATCTTTCAACTATGGAAGTCTTCTCATCCAGTTCAAGACCTTAA 975 0.4103 MFQQRLNNNITSSELDQMLHMLSSSSFSNPMPFSTTSMDQSNSKWKPHVEIAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKHRRGRVVRNSQTGHLSTDGSDSVDGDQQNQNNVSRDIDMAVVFAKFLNQNTSSTHHGDHEEIETESEANNNNGSTSSNNMNNLSTTPDSIETENDAVFQPDVVVVNGDPFDPELSLSEFDGFLGVDEDVVQDVLWPDSSDAMMVSTWQQQQPPSMMQMEMDYSMPLPLPLNEGDNHDQLLLPVTVNSNSASGNLINESWNTSWDSFDLSTMEVFSSSSRP 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02911 324 MobiDBLite consensus disorder prediction 155 193 - -
Vivi3g02911 324 MobiDBLite consensus disorder prediction 97 134 - -
Vivi3g02911 324 MobiDBLite consensus disorder prediction 171 193 - -
Vivi3g02911 324 Pfam Dof domain, zinc finger 53 106 IPR003851 GO:0003677|GO:0006355
Vivi3g02911 324 ProSitePatterns Zinc finger Dof-type signature. 55 91 IPR003851 GO:0003677|GO:0006355
Vivi3g02911 324 ProSiteProfiles Zinc finger Dof-type profile. 53 107 IPR003851 GO:0003677|GO:0006355
Vivi3g02911 324 MobiDBLite consensus disorder prediction 113 134 - -
Vivi3g02911 324 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 188 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02911 Vivi-Chr3 48611916 48613202 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02911 19 152 C2C2-Dof Transcription Factor Family AT3G52440 49.650 3.35e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi3g02911 zf-Dof 1.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02911 - - mtr:11416134 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02911 3 48611916 48613202 Vivi3g02911 3 48611916 48613202 ECH
Vivi3g02911 3 48611916 48613202 Vivi3g02911 3 48611916 48613202 PCT