Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02784 ATGGACACAACTCAGTGGGCACAGGGGAATATTGGGCTGGTTAAACAAATGGAAGGGTCAAAAGCTCCTATGATAGAGAGAAGAGCAAGGCCACAAAAAGATCAAGCTTTGAACTGTCCACGGTGCAATTCAACCAACACTAAATTCTGTTACTACAATAACTACAGTCTCTCTCAACCAAGGTACTTCTGCAAAACCTGTAGAAGGTATTGGACTGAAGGTGGTTCTTTGAGAAATGTGCCTGTAGGTGGTGGCTCAAGAAAAAACAAAAGATCGTCACCATCACCTTCACCTTCGATCTCGCAACAACAACCTCCATCATCATCCATAACAAAAAATATTATCGTTCCGGATCTTACTCAATCCGCTTCTCAAAACCCTAAGATCCATCAAGGACAAGATCTTAACCTAGCTTATCCACCACCACAAACTGAAGATAATTACAACACCATATCTAAATTCATTGAACTTCCTTACACGACTGATCAAGAAAAAACTCGTAATTCGTCGTCGTCGCCGCTTTCTGCTATGGAGTTGCTCAAAACTGGGATTGCTGCTTCTTCATCGAGGGGTTTGAATTCCTTTATGCCTATGTCATTATCTGAATCTAGTGCAATGTATAATTCAACTGGTTTCGCTTTGCAAGATTTTAAGCCTGGTCTTAATTTTAGTCTAGAGGGATTCGAGAATGGTTATGGTGGTTTACAAGGGATGAATCAAGAGAGTTCTGGTGGTGGTGGCGGTGGTGCAAGGATGTTGTTTCCTGTGGTGGAAGAGTTGAACAATAATAATAATAATAAGCAACAACAGCAACAAGTTCCAAATAGTGGTGAGTTTGAACAACATCAACATCAACATCAGCAGAATAATAGAAGCCAAGGAGATTCAACTGGTTATTGGAATGGTATGTTAGGTGGTGGATCATGGTAA 930 0.4075 MDTTQWAQGNIGLVKQMEGSKAPMIERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSPSPSPSISQQQPPSSSITKNIIVPDLTQSASQNPKIHQGQDLNLAYPPPQTEDNYNTISKFIELPYTTDQEKTRNSSSSPLSAMELLKTGIAASSSRGLNSFMPMSLSESSAMYNSTGFALQDFKPGLNFSLEGFENGYGGLQGMNQESSGGGGGGARMLFPVVEELNNNNNNKQQQQQVPNSGEFEQHQHQHQQNNRSQGDSTGYWNGMLGGGSW 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02784 309 MobiDBLite consensus disorder prediction 124 143 - -
Vivi3g02784 309 MobiDBLite consensus disorder prediction 86 110 - -
Vivi3g02784 309 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Vivi3g02784 309 MobiDBLite consensus disorder prediction 78 110 - -
Vivi3g02784 309 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Vivi3g02784 309 MobiDBLite consensus disorder prediction 266 299 - -
Vivi3g02784 309 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 264 IPR045174 GO:0003700|GO:0006355
Vivi3g02784 309 Pfam Dof domain, zinc finger 34 91 IPR003851 GO:0003677|GO:0006355
Vivi3g02784 309 MobiDBLite consensus disorder prediction 266 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02784 Vivi-Chr3 46571267 46572962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02784 22 309 C2C2-Dof Transcription Factor Family AT3G61850 41.694 4.03e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi3g02784 zf-Dof 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02784 - - tpra:123909226 451.825