Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01958 ATGCAATCAACAAACGGTTCTGAATCGAAACCGACCGAACAGAATACTCAAACTCAACAACGGCCACCGAAAACGCCGCCGCATTCACTTACAGTTCCACCGCATCAACCGTGGGTTCCGATGCAATACCCGGCCGCAATGGTAATGCCGCACCATATGTTACCGCCGCAACATTATGCACCGCCACCGCATCATTACGTGCCTTATCATCACTATCAGCATCACGCGCCTCACGTGCATCAAGGATCTAGTGTTCTTGAAAATAAGACGATCTGGGTCGGTGATTTGCAGCATTGGATGGATGAGAATTATCTTCACCGATGTTTCGCTTCTAACGGCGAGATTTTCTCAATTAAAGTTATTCGCAATAAGCAGACTGGTCAACCAGAGGGTTATGGATTTGTGGAATTTCATTCACACGGGATCGCTGAGAATATTTTAGTGAATTATGCTGGGATGTTGATGCCTAATACAGATCAACCGTTTCGCCTTAACTGGGCAACATTTAGCACAGGAGATCACAAACGATCAGATAATGTTCCTGATCTTTCTCTTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCACGTTGTTTGAAGTTTTTTCTAATAAATACCCTTCTGTGAAAGCTGCAAAAGTTGTTTTTGATGCCAATACCGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAAAGGACCAAGGCTTTGAGTGAAATGAATGGTGTTTATTGTTCTAGTAGGCCTATGCGAATTGGTGCTGCAACTCCTAGGAAATCCTCTGGCTATCAACAAGGAGGCCACTCAAATAACACATCCAACCAATCTGAAGCTGATTCTACAAATACAACCATATTTGTGGGAGGACTTGACCCTAGTGCTACTGCTGAAGATCTTAGACAACCATTCTCCCAGTATGGCGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCCAACAGAAATAATGCAGAAGAGGCACTGCAGAAGCTAAATGGTGCAACAGTTGGCAAGCAAACAGTTCGCCTTTCTTGGGGCCGCAATCCGGCAAATAAGCAGCATAGAATGGACTTCGGTAGTCCTTGGAATGGAGCCTATTATGGGGGAGGACCTGTTTATGACGGTTACGGATATGCTTTGCCGCACCCTCATGACCCGAGCATGTATGCTGCTGCTTATGGGGCTTACCCCGTTTACGGAGGAGGACATCAACAGCAAGTAAGCTAA 1263 0.4489 MQSTNGSESKPTEQNTQTQQRPPKTPPHSLTVPPHQPWVPMQYPAAMVMPHHMLPPQHYAPPPHHYVPYHHYQHHAPHVHQGSSVLENKTIWVGDLQHWMDENYLHRCFASNGEIFSIKVIRNKQTGQPEGYGFVEFHSHGIAENILVNYAGMLMPNTDQPFRLNWATFSTGDHKRSDNVPDLSLFVGDLAADVTDSTLFEVFSNKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERTKALSEMNGVYCSSRPMRIGAATPRKSSGYQQGGHSNNTSNQSEADSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGATVGKQTVRLSWGRNPANKQHRMDFGSPWNGAYYGGGPVYDGYGYALPHPHDPSMYAAAYGAYPVYGGGHQQQVS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01958 420 FunFam Polyadenylate-binding protein RBP47B 88 168 - -
Vivi3g01958 420 FunFam Polyadenylate-binding protein RBP47 272 391 - -
Vivi3g01958 420 Gene3D - 88 168 IPR012677 -
Vivi3g01958 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 262 IPR000504 GO:0003723
Vivi3g01958 420 Gene3D - 170 275 IPR012677 -
Vivi3g01958 420 MobiDBLite consensus disorder prediction 259 294 - -
Vivi3g01958 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 77 364 - -
Vivi3g01958 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 254 IPR000504 GO:0003723
Vivi3g01958 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 157 IPR000504 GO:0003723
Vivi3g01958 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 353 IPR000504 GO:0003723
Vivi3g01958 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 360 IPR000504 GO:0003723
Vivi3g01958 420 CDD RRM3_NGR1_NAM8_like 287 358 - -
Vivi3g01958 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 169 IPR000504 GO:0003723
Vivi3g01958 420 MobiDBLite consensus disorder prediction 1 36 - -
Vivi3g01958 420 SMART rrm1_1 90 165 IPR000504 GO:0003723
Vivi3g01958 420 SMART rrm1_1 184 258 IPR000504 GO:0003723
Vivi3g01958 420 SMART rrm1_1 289 356 IPR000504 GO:0003723
Vivi3g01958 420 CDD RRM1_SECp43_like 90 170 - -
Vivi3g01958 420 FunFam Polyadenylate-binding protein RBP47B 170 271 - -
Vivi3g01958 420 SUPERFAMILY RNA-binding domain, RBD 49 171 IPR035979 GO:0003676
Vivi3g01958 420 MobiDBLite consensus disorder prediction 263 294 - -
Vivi3g01958 420 MobiDBLite consensus disorder prediction 1 25 - -
Vivi3g01958 420 CDD RRM2_SECp43_like 182 261 - -
Vivi3g01958 420 Gene3D - 276 390 IPR012677 -
Vivi3g01958 420 SUPERFAMILY RNA-binding domain, RBD 182 357 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01958 Vivi-Chr3 32336166 32339695 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01958 65 368 Eukaryotic Initiation Factors Gene Family AT4G34110 27.586 8.45e-29 117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01958 3 32336166 32339695 Vivi3g01958 3 32336166 32339695 ECH
Vivi4g05657 4 192538808 192543486 Vivi3g01958 3 32336166 32339695 PCT