Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01954 ATGGAGAGATCACAATCCTCACTTCTACAAATTCAGCCCCCAACTTATGGAAACTTAGTGACAATTCTAAGTATCGATGGTGGCGGTATTAGAGGCCTTATTCCTGCAACTATCCTTGAGTACCTTGAATCAGAACTTCAGGAATTGGACGGTGAATCTGCAAGACTTGCCGATTACTTTGATGTGATTACCGGAACAAGTACGGGTGGTCTTGTAACTGCCATGTTAAGTGCTCCAAATGATAAACAACGTCCACTTTTTGCTGCTAAAGATATCAAGCCCTTTTATTTGGAACACTGTCCAAGTATTTTTCCACAAAACAAGCACATGTTAGGTCCAATGGGAAAATTGTTTAGATCATTGGCAGGACCAAAATACGATGGAAAATACCTTCACAATGTGGTGATGGAAAAGCTTGGAGAAATTCGTGTGCATCAGACTCTCACCAATATTGTGATCCCAGCGTTTGACATAAAGACCATGCAACCAATCATTTTTTCAACATATCAAAGCAAGAGAACACCATGCATGGATGCTCGTCTCTCTGACATATGTATTAGTACTTCTGCTGCTCCCACCTATCTTCCCGGTCACAACTTCAAGAATCAAGACACAGAAGGAAACGTACATGAATTCAACCTCATTGATGGTGGTGTTTGTGCAAATAATCCGACCTTAGTGGCCGTGAATGAAGTAACCAAGCAGATAGTAAATCAGAATAATGACTTCTATGCCATCAAGCCCATGGAATATAGTCGCTTTCTGATAATTTCACTTGGAACTGGTACACCAAAGAATGAACAAAAATTTGATGCAAAAATGGCAGCAAAATGGGGTCTATTGAATTGGTTAGCTCACGGCGGTTCCACTCCCTTAATTGATATCTTTAGTCAAGCCTCGGGAGATATGGTTGATTTTCATATTGCTACGGTCACTCAAGCTCTTAACTGTCAAGATAATTATCTACGAATTCAGGATGATACATTGACTGGCATAGACTCTTCTGTTGATATTGCCACGAAAGAGAATTTAGAAAACCTATGCAAAATTGGAGAAAGGTTATTGAAGAAACCTGTAACTAAGGTCAATTTAGAGAACGGTATGTGTGAGCCTACTGGAAATGCTGAGACCAACCAAGAAGCTCTCAAAAGGTATTTACGGTTTTCAATGATTATCAAGTATCAACCATTTTTTTTTTTTGCTGATGATTCTTTATATATATATATGTTCAATAGTTAA 1239 0.3882 MERSQSSLLQIQPPTYGNLVTILSIDGGGIRGLIPATILEYLESELQELDGESARLADYFDVITGTSTGGLVTAMLSAPNDKQRPLFAAKDIKPFYLEHCPSIFPQNKHMLGPMGKLFRSLAGPKYDGKYLHNVVMEKLGEIRVHQTLTNIVIPAFDIKTMQPIIFSTYQSKRTPCMDARLSDICISTSAAPTYLPGHNFKNQDTEGNVHEFNLIDGGVCANNPTLVAVNEVTKQIVNQNNDFYAIKPMEYSRFLIISLGTGTPKNEQKFDAKMAAKWGLLNWLAHGGSTPLIDIFSQASGDMVDFHIATVTQALNCQDNYLRIQDDTLTGIDSSVDIATKENLENLCKIGERLLKKPVTKVNLENGMCEPTGNAETNQEALKRYLRFSMIIKYQPFFFFADDSLYIYMFNS 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01954 412 CDD Pat17_isozyme_like 17 367 - -
Vivi3g01954 412 Pfam Patatin-like phospholipase 23 228 IPR002641 GO:0006629
Vivi3g01954 412 PANTHER XYLOSE ISOMERASE 7 386 - -
Vivi3g01954 412 SUPERFAMILY FabD/lysophospholipase-like 18 374 IPR016035 -
Vivi3g01954 412 FunFam Patatin 12 393 - -
Vivi3g01954 412 Gene3D Cytosolic phospholipase A2 catalytic domain 10 390 - -
Vivi3g01954 412 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 23 229 IPR002641 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01954 Vivi-Chr3 32305433 32307106 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01954 11 382 Miscellaneous Gene Families AT2G26560 65.054 1.77e-178 501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01954 3 32305433 32307106 Vivi3g01954 3 32305433 32307106 ECH
Vivi3g01954 3 32305433 32307106 Vivi3g01952 3 32298970 32307106 PCT