Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01952 ATGGAGAGATCACAATCCTCACTTCTACAAATTCAGCCCCCAACTTATGGAAACTTAGTGACAATTCTAAGTATCGATGGTGGCGGTATTAGAGGCCTTATTCCTGCAACTATCCTTGAGTACCTTGAATCAGAACTTCAGGAATTGGACGGTGAATCTGCAAGACTTGCCGATTACTTTGATGTGATTACCGGAACAAGTACGGGTGGTCTTGTAACTGCCATGTTAAGTGCTCCAAATGATAAACAACGTCCACTTTTTGCTGCTAAAGATATCAAGCCCTTTTATTTGGAACACTGTCCAAGTATTTTTCCACAAAACAAGCACATGTTAGGTCCAATGGGAAAATTGTTTAGATCATTGGCAGGACCAAAATACGATGGAAAATACCTTCACAATGTGGTGATGGAAAAGCTTGGAGAAATTCGTGTGCATCAGACTCTCACCAATATTGTGATCCCAGCGTTTGACATAAAGACCATGCAACCAATCATTTTTTCAACATATCAAAGCAAGAGAACACCATGCATGGATGCTCGTCTCTCTGACATATGTATTAGTACTTCTGCTGCTCCCACCTATCTTCCCGGTCACAACTTCAAGAATCAAGACACAGAAGGAAACGTACATGAATTCAACCTCATTGATGGTGGTGTTTGTGCAAATAATCCGACCTTAGTGGCCGTGAATGAAGTAACCAAGCAGATAGTAAATCAGAATAATGACTTCTATGCCATCAAGCCCATGGAATATAGTCGCTTTCTGATAATTTCACTTGGAACTGGTACACCAAAGAATGAACAAAAATTTGATGCAAAAATGGCAGCAAAATGGGGTCTATTGAATTGGTTAGCTCACGGCGGTTCCACTCCCTTAATTGATATCTTTAGTCAAGCCTCGGGAGATATGGTTGATTTTCATATTGCTACGGTCACTCAAGCTCTTAACTGTCAAGATAATTATCTACGAATTCAGGATGATACATTGACTGGCATAGACTCTTCTGTTGATATTGCCACGAAAGAGAATTTAGAAAACCTATGCAAAATTGGAGAAAGGTTATTGAAGAAACCTGTAACTAAGGTCAATTTAGAGAACGGTATGTGTGAGCCTACTGGAAATGCTGAGACCAACCAAGAAGCTCTCAAAAGGTTTGCAAAAATACTTTCACAAGAGAGGAAGCTTCGAGAATTGACATCTCCTCGCACTAACAATAACTTAAAATAG 1227 0.3985 MERSQSSLLQIQPPTYGNLVTILSIDGGGIRGLIPATILEYLESELQELDGESARLADYFDVITGTSTGGLVTAMLSAPNDKQRPLFAAKDIKPFYLEHCPSIFPQNKHMLGPMGKLFRSLAGPKYDGKYLHNVVMEKLGEIRVHQTLTNIVIPAFDIKTMQPIIFSTYQSKRTPCMDARLSDICISTSAAPTYLPGHNFKNQDTEGNVHEFNLIDGGVCANNPTLVAVNEVTKQIVNQNNDFYAIKPMEYSRFLIISLGTGTPKNEQKFDAKMAAKWGLLNWLAHGGSTPLIDIFSQASGDMVDFHIATVTQALNCQDNYLRIQDDTLTGIDSSVDIATKENLENLCKIGERLLKKPVTKVNLENGMCEPTGNAETNQEALKRFAKILSQERKLRELTSPRTNNNLK 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01952 408 SUPERFAMILY FabD/lysophospholipase-like 18 369 IPR016035 -
Vivi3g01952 408 CDD Pat17_isozyme_like 17 367 - -
Vivi3g01952 408 FunFam Patatin 12 401 - -
Vivi3g01952 408 Gene3D Cytosolic phospholipase A2 catalytic domain 10 400 - -
Vivi3g01952 408 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 23 229 IPR002641 GO:0006629
Vivi3g01952 408 PANTHER XYLOSE ISOMERASE 7 397 - -
Vivi3g01952 408 Pfam Patatin-like phospholipase 23 228 IPR002641 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01952 Vivi-Chr3 32298970 32307106 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01952 11 402 Miscellaneous Gene Families AT2G26560 64.031 0.0 524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01952 3 32298970 32307106 Vivi3g01952 3 32298970 32307106 ECH
Vivi3g01954 3 32305433 32307106 Vivi3g01952 3 32298970 32307106 PCT