Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01939 ATGTCTAGTCGGAATGAACGCCAACACCAACATCAACATCAAAACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCAACACCAACATCAAAATCAACATCAACATCAAAATCAACATCAACACCATACCGTTCCTCTTGCAGTGCTTTTGAAGCGTGAATTGGCGAACGAAAAAGTCGAGAAATCGGATTTGGTTGTTGTGTATAGCCAAGCTAGCGAGAACAAGAAAGGAGAGGATTTCACGTTGATAAAGACCGAACGACAAAGAGTGGTTGCAGATGGGGTTTCTACATATTCTGTTTTTGGGCTATTTGATGGACACAATGGATCTGCTGCTGCTGTTTATACCAAGGAGAATCTTCTGAACAATGTTTTAAGTGCCATTCCCCCAGATCTCAACAGAGATGAGTGGGTAGCAGCATTGCCGAGGGCTTTGGTTGCTGGCTTTGTAAAAACTGATAAAGATTTTCAACAAAAAGCAAAAACATCAGGAACAACGGTAACCTTTGTGATTATAGAAGGATGGGTTATAACAGTTGCATCAGTTGGTGATTCCCGTTGCATACTTGAACCTTCTGAAGGTGGGATTCATTACTTGTCAGCAGATCATCGACTAGACACCAATGAAGAGGAGAGGGCGCGCATCACTTCTAGTGGGGGTGAAGTTGGTCGGCTAAATACAGGTGGAGGTGCAGAGGTTGGCCCGTTGAGATGTTGGCCTGGTGGCCTGTGTCTTTCTCGATCCATTGGTGATATGGATGTTGGTGAATTTATTGTCCCTGTACCATATGTAAAGCAAGTGAAGATATCCACTTCTGGAGGAAGACTTATTATCTGCAGTGATGGAGTCTGGGATGCTCTATCTGCCGAAGCTGTCCTTGATTGTTGTCGTGGCATGTCAGCGGAGGCTGCAGCACCACATATTGTAAAAGAATCTTTGCAAGCAAAGGGACTTAGGGATGACACAACCTGCATCGTGGTTGATATATTACCGCAGGAGAAGCCACCTACTTCTGCACCAACACAAAAGAGACCGGTAAAAGGAATGTTGAAGGCCATTTTTCGGAAAAAGTCCTCTGAGCCATCTTCATATATTGAAAAAGAATACGTTGAGCCAGATATGGTACGGGAATTATACGAGGAAGGATCTGCCATGCTTTCAGAAAGGTTTGAAACAAAATATCCGCTCTGCAACATGTTCAAGTTATTCATGTGTGCAGTATGTCAAGTAGAGATTAAACCCGGGGAGGGCATTTCAGTACACGAGGGTGCGCCTAACCAAGGGAAACCGCGCCCCTGGGATGGACCTTTCCTATGCTCAAGTTGCCAAGAAAAGAAAGAAGCCATGGAAGGGAAACGAACATCAGATCGACATAGCAGGGGAAGTGACTAA 1416 0.4541 MSSRNERQHQHQHQNQHQHQHQHQHQHQHQHQHQHQHQNQHQHQNQHQHHTVPLAVLLKRELANEKVEKSDLVVVYSQASENKKGEDFTLIKTERQRVVADGVSTYSVFGLFDGHNGSAAAVYTKENLLNNVLSAIPPDLNRDEWVAALPRALVAGFVKTDKDFQQKAKTSGTTVTFVIIEGWVITVASVGDSRCILEPSEGGIHYLSADHRLDTNEEERARITSSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKISTSGGRLIICSDGVWDALSAEAVLDCCRGMSAEAAAPHIVKESLQAKGLRDDTTCIVVDILPQEKPPTSAPTQKRPVKGMLKAIFRKKSSEPSSYIEKEYVEPDMVRELYEEGSAMLSERFETKYPLCNMFKLFMCAVCQVEIKPGEGISVHEGAPNQGKPRPWDGPFLCSSCQEKKEAMEGKRTSDRHSRGSD 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01939 471 CDD PP2Cc 75 337 IPR001932 -
Vivi3g01939 471 SUPERFAMILY PP2C-like 74 337 IPR036457 -
Vivi3g01939 471 PANTHER PROTEIN PHOSPHATASE 32 336 IPR015655 GO:0004722|GO:0006470
Vivi3g01939 471 SMART PP2C_SIG_2 83 337 IPR001932 -
Vivi3g01939 471 SMART PP2C_4 67 335 IPR001932 -
Vivi3g01939 471 Gene3D - 64 344 IPR036457 -
Vivi3g01939 471 ProSiteProfiles PPM-type phosphatase domain profile. 72 337 IPR001932 -
Vivi3g01939 471 FunFam probable protein phosphatase 2C 12 76 343 - -
Vivi3g01939 471 MobiDBLite consensus disorder prediction 1 50 - -
Vivi3g01939 471 Pfam Protein phosphatase 2C 101 324 IPR001932 -
Vivi3g01939 471 MobiDBLite consensus disorder prediction 14 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01939 Vivi-Chr3 32085981 32091352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01939 45 471 PP2C-type Phosphatase Gene Family AT1G47380 75.701 0.0 698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01939 3 32085981 32091352 Vivi3g01939 3 32085981 32091352 ECH
Vivi4g05636 4 192302561 192308089 Vivi3g01939 3 32085981 32091352 PCT