Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01901 ATGGCTCTTCTACTAGACAACTGTGAAGGCATTTTACTCTCTCTAGACTCACACAAATCAGTCCCAGCACCATTCCTCACCAAAACATACCAACTCGTCGACGATCCATCCACAGATCACATAGTTTCTTGGGGAGAAGACGACTCCACCTTCGTCGTTTGGCGTCCACCGGAATTCGCCAGAGACCTCCTCCCAAATTACTTCAAACACAACAACTTCTCCAGCTTCGTCCGCCAACTCAACACTTATGGTTTTAGAAAGATTGTACCTGATAGATGGGAGTTTGCTAATGAGTATTTCAAGAAAGGAGAGAAGCATTTGCTATGTGAGATTCATAGAAGAAAAACAACGCAGCCGCAACAAACCGGAATCATGAGTCACCACCACCATCAGCACCACCACCAGCACAACATTCCTCCGAGCTTTTTCCCGTTTTCGAACACTAGAGTAAGCATTTCTCCACCTAATGACTACTCCGATGACCAACTCAACAACTGGTCTTGTGATTCTCCGCCATTAACTTCACCGTCATTCATCAACGGAGGACAAACAACGACCACCACAACGTCGACAAACTACAACACTTCTGTTACTGCTCTTTCCGAAGACAATGAAAGACTAAGAAGAAGTAACAACATGTTAATGTCGGAGTTAGCTCACATGAAGAAGCTTTACAATGATATAATCTACTTTGTTCAGAATCATGTTAAGCCTGTTGCTCCGAGTAACTCTTACTCTTCTTCTTATTTACTACCACAAGCTTCTTCAAATCCTTCAAATCTTAATCCTATCAATGGTGGTGGTAATGTTTCAATGATGCAAAGACCAATGAACCAGCTTTTGGGGTATTACAGTAATAACACCAACAATAACTCTACCAACCCTAAACATGTGACTCAGCTTCAACATCAAAATCAATCTCATCATCATGGTGCAAATGTGAATGTGAACTCTCCAACAACCACATCAAGAAGCTCTATAACAATGGTGGAAGGACACAACAGTAATAGCTATAACTGCAGCAAGACAAAGCTTTTTGGAGTATCACTACAGTCCAAGAAAAGAGTGCACCCTGAATGTGGATCTAATAATCCAACTAATTTGGAAACCAACAAGACTCGTTTGGTTTTGGATCAGAAAGATGATTTTGATTTTGATTTGGGTTTGAATCTCATGCCTCCTTCCACTTGTTAA 1194 0.4137 MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPSTDHIVSWGEDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEYFKKGEKHLLCEIHRRKTTQPQQTGIMSHHHHQHHHQHNIPPSFFPFSNTRVSISPPNDYSDDQLNNWSCDSPPLTSPSFINGGQTTTTTTSTNYNTSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSSYLLPQASSNPSNLNPINGGGNVSMMQRPMNQLLGYYSNNTNNNSTNPKHVTQLQHQNQSHHHGANVNVNSPTTTSRSSITMVEGHNSNSYNCSKTKLFGVSLQSKKRVHPECGSNNPTNLETNKTRLVLDQKDDFDFDLGLNLMPPSTC 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01901 397 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi3g01901 397 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi3g01901 397 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi3g01901 397 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Vivi3g01901 397 FunFam Heat stress transcription factor B-4 17 115 - -
Vivi3g01901 397 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi3g01901 397 Coils Coil 197 217 - -
Vivi3g01901 397 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 310 IPR027725 -
Vivi3g01901 397 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi3g01901 397 Gene3D - 17 116 IPR036388 -
Vivi3g01901 397 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01901 Vivi-Chr3 31003139 31004970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01901 1 396 HSF AT1G46264 52.885 4.77e-120 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi3g01901 HSF_DNA-bind 1.9e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01901 3 31003139 31004970 Vivi3g01901 3 31003139 31004970 ECH
Vivi3g01901 3 31003139 31004970 Vivi3g01901 3 31003139 31004970 PCT