Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01873 ATGTCTCACACTTTCCTCATGGATACCTTGTACTGCTCCGAAGAACATTGGGAGGAACAAGATGAGTTAGAACACGAGTACGATAATGTTTCCTTAAACAACACAATAACAAACTCTACTCAATCTTCGTTCCTAGAAACCGACATGTTTTGGGACGATGAAGAACTCAAATCACTTCTCTCCAAAGAACAACAAAACCCTCTTCATATCTTCCTCCAAACCAACCCTGTGTTGGAAAGTGCCCGTAGAGAATCCATTGACTGGATTCTGAAAGTGAGTTCTCATTACTCGTTCTCACCTCTCACCGCTGTTCTTGCTGTCAACTACCTCGATAGGTTTCTGTTTAGCTTCCGGTTTCAGAATGAGAAGCCATGGATGACTCAGCTTTCTGCTGTTGCTTGTCTCTCTCTTGCTGCTAAAGTTGAAGAAACCCAAGTTCCTCTTTTACTAGATCTTCAAGTTGAGGAAAGTAGATACTTGTTTGAAGCAAAGACGATAAAAAAGATGGAGATTTTGGTTCTTTCAACACTTGGGTGGAAGATGAATCCTGCAACACCTCTTTCTTTTATTGATTATATGATAAGAAGACTTGGATTGAAAGATTGTCTTTGTTGGGAGTTTCTTCATAGATGTGAAGATGTTGTTCTCTCTGTCATTAGATCAGATTCAAAGTTCATGAGTTATCTACCTTCTGTTTTGGCAACTGCTACAATGATTCATGTTTTCGACAGTGTTGAGGCTAGTTTAGGAGATGAATACAAAAACCAGCTTCTTAGTATTGTTGGAATCAACAAAGAAAAAGTGGATGAATGTGGGAAGCTGATGATGAAACATTGGTTTGAATATGGAGAAGAGAATGGGAATCAATTCAATAAACGAAAGTTTGGGTCAATTCCAAGTAGTCCAAATGGTGTAATGGATGTGTCATTTAGCTGTGAAAATTCCAATGATTCATGGGTTACAGCAGCAACAGTTTCAGTATCATCTTCACCAGAGCCTTTGTCAAAGAGGATCAAAATTAAGAACAGTTTCAATTAA 1038 0.3854 MSHTFLMDTLYCSEEHWEEQDELEHEYDNVSLNNTITNSTQSSFLETDMFWDDEELKSLLSKEQQNPLHIFLQTNPVLESARRESIDWILKVSSHYSFSPLTAVLAVNYLDRFLFSFRFQNEKPWMTQLSAVACLSLAAKVEETQVPLLLDLQVEESRYLFEAKTIKKMEILVLSTLGWKMNPATPLSFIDYMIRRLGLKDCLCWEFLHRCEDVVLSVIRSDSKFMSYLPSVLATATMIHVFDSVEASLGDEYKNQLLSIVGINKEKVDECGKLMMKHWFEYGEENGNQFNKRKFGSIPSSPNGVMDVSFSCENSNDSWVTAATVSVSSSPEPLSKRIKIKNSFN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01873 345 PANTHER CYCLINS 54 277 IPR039361 -
Vivi3g01873 345 FunFam CYCLIN D32 183 273 - -
Vivi3g01873 345 CDD CYCLIN_AtCycD-like_rpt1 81 179 - -
Vivi3g01873 345 Pfam Cyclin, N-terminal domain 63 182 IPR006671 -
Vivi3g01873 345 SUPERFAMILY Cyclin-like 49 182 IPR036915 -
Vivi3g01873 345 Gene3D - 69 182 - -
Vivi3g01873 345 SUPERFAMILY Cyclin-like 166 291 IPR036915 -
Vivi3g01873 345 CDD CYCLIN_AtCycD-like_rpt2 185 275 - -
Vivi3g01873 345 SMART cyclin_7 87 175 IPR013763 -
Vivi3g01873 345 FunFam D3-type cyclin 75 182 - -
Vivi3g01873 345 Pfam Cyclin, C-terminal domain 185 311 IPR004367 -
Vivi3g01873 345 Gene3D - 59 272 - -
Vivi3g01873 345 SMART Cyclin_C_2 184 314 IPR004367 -
Vivi3g01873 345 ProSitePatterns Cyclins signature. 82 113 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01873 Vivi-Chr3 30307320 30308913 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01873 6 341 Core Cell Cycle Gene Families AT5G67260 48.397 3.36e-91 276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01873 3 30307320 30308913 Vivi1g02814 1 60949932 60951899 ECH
Vivi3g01873 3 30307320 30308913 Vivi1g03785 1 80531853 80533985 ECH
Vivi3g01873 3 30307320 30308913 Vivi3g01873 3 30307320 30308913 ECH
Vivi3g01873 3 30307320 30308913 Vivi3g01873 3 30307320 30308913 PCT