Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01854 ATGATGATGGAGACTCGTGCCTCAAAGAAGAAGAGAGCTAACACCAATCAAAAGCCACAACTCGTCGTTCCAAAACGACATAGGGTAGTTTTCCCCAATATCCCCCATCTCAATGTTCGTGTTTATCAAACTAGACAAAGACTCAAATCTCAGATAAACCCTAACCTTAAAAACTCAACGACAACAAAAACCCTTCCTCTCCTTCATAATTCCAATTCGAATAAACCCGTTCATAACAAAACTAATGGCGAATGTGACCACCAACAGATCATTGAAACTTACGTATCCGACATCGATGATCATCATCGGACAATGGAGGTGCAGAAAAAGCGAAGACCAACTGTTGGCTACATTGAGAATATTCAGAAAGAGGTTACTATAAACATGAGGGGAACATTGGTGGATTGGTTAGTGAAGGTTGCAGACAAGCACAAGCTTCTTCCGGAAACCCTTCATCTATGTATCTCCTACATTGACAGATTCTTATCTCTTCAATCTGTTAACGAAACAAATCTTGCGTTGGTTGGTGTTTCGTCTATGCTCATTGCAGCTAAGTACGAAGAAATCACACCACCAAAGGCAGTCGTTTTCTGCAAAATCGCTAAGAACGCTTATGGCCTTTCCGAGGTTTTGAAGATGGAAGTTGACATACTCAAGTCACTAAAATATGAAATTGGAAACCCTAATGTTACCACATTTCTAAAGAGGTTTGTTGGGCTTGCTTGTGGGAATCAAAAGAATTCTGATTTGCAGTTTGAATATTTGTGCAACTATCTTGCTGATCTAAGCTTGTTGGAGTACGAGTGTATAAGATTCTTGCCTTCTGTTGTGGCTGCATCGGTTATATTTCTCGCTAGATTTATTATCCAACCAGAAGTAGATCCTTGGACGCCATCCTTGTGTGAATGCTTGGGTTACAAGTCATCTGAGTTGAAGGAATGTGTTGCTATTTTACATGACTTGTATTTCTCAAGAAGAGCAGCATCCTTGAAAACTCTTCGCAACAAATACAATCGGAAAAAGTTGAAATCTGTAGCCAATTTGCCTTCTCCGCCAGAGGTGCCAACTCATTACTTCAAAGAGGCATGA 1089 0.4031 MMMETRASKKKRANTNQKPQLVVPKRHRVVFPNIPHLNVRVYQTRQRLKSQINPNLKNSTTTKTLPLLHNSNSNKPVHNKTNGECDHQQIIETYVSDIDDHHRTMEVQKKRRPTVGYIENIQKEVTINMRGTLVDWLVKVADKHKLLPETLHLCISYIDRFLSLQSVNETNLALVGVSSMLIAAKYEEITPPKAVVFCKIAKNAYGLSEVLKMEVDILKSLKYEIGNPNVTTFLKRFVGLACGNQKNSDLQFEYLCNYLADLSLLEYECIRFLPSVVAASVIFLARFIIQPEVDPWTPSLCECLGYKSSELKECVAILHDLYFSRRAASLKTLRNKYNRKKLKSVANLPSPPEVPTHYFKEA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01854 362 SUPERFAMILY Cyclin-like 86 225 IPR036915 -
Vivi3g01854 362 SMART Cyclin_C_2 228 351 IPR004367 -
Vivi3g01854 362 SUPERFAMILY Cyclin-like 228 352 IPR036915 -
Vivi3g01854 362 PIRSF Cyclin_A_B_D_E 2 360 IPR046965 GO:0016538|GO:0044772
Vivi3g01854 362 MobiDBLite consensus disorder prediction 55 82 - -
Vivi3g01854 362 PANTHER CYCLINS 72 337 IPR039361 -
Vivi3g01854 362 Pfam Cyclin, C-terminal domain 228 350 IPR004367 -
Vivi3g01854 362 FunFam Cyclin superfamily protein, putative 225 297 - -
Vivi3g01854 362 FunFam G2/mitotic-specific cyclin 113 224 - -
Vivi3g01854 362 ProSitePatterns Cyclins signature. 130 161 IPR006671 -
Vivi3g01854 362 Pfam Cyclin, N-terminal domain 106 225 IPR006671 -
Vivi3g01854 362 Gene3D - 97 347 - -
Vivi3g01854 362 Gene3D - 111 226 - -
Vivi3g01854 362 SMART cyclin_7 135 219 IPR013763 -
Vivi3g01854 362 SMART cyclin_7 232 320 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01854 Vivi-Chr3 30038786 30040521 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01854 5 361 Core Cell Cycle Gene Families AT5G43080 45.098 1.35e-105 312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05566 4 190998566 191001899 Vivi3g01854 3 30038786 30040521 PCT