Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01803 ATGGCTATGGAAGCGCTTAACTCACCAACCACCGCTACTCCTTTCACTCCCTTCGAGGAACCGAATCACAGCTACCTCGATACACCATGGACGAAAGGTAAACGTTCTAAGCGTTCTCGGATGGATCAATCTTCATGCAGTGAAGAAGAGTATCTCGCTCTCTGTCTCATCATGCTCGCTCGCAGCGGCAACAACAACAGCAACAGCTCCACCGCGAAACAGATTCTATCTGATACTGAATCGGCGCCGGCGCAGGCGCCGCTAACCACCGTTAAACTCACTCACAAATGCTCTGTTTGCGATAAAGCTTTTTCATCTTACCAAGCACTCGGCGGACACAAAGCCAGCCACAGAAAACTCGCGCTTATGTCCGCCGCCGCCGAAGATCAGAATCAGAACCAGAATCAGACTACCACCACCTCATCCGCCGTGACGACCAGCTCTGCATCCAACGGAGGTAAAATCAAGACTCACGACTGTTCCATCTGTCACAAATCCTTCCCTACCGGACAGGCTTTGGGAGGACACAAGCGTTGCCACTACGAAGGCGGTGTAGGTGGCGGAGCCGGAAGTAGCGCCGTAACCGCCTCTGAAGGAGTTGGATCCTCTCACAGCCAGCACCGTGACTTTGATCTTAATCTCCCGGCTTTTCCGGACTTTTCAAAGAAGTTTCTCGTGGATGAAGAAGTTTCCAGCCCTCTTCCTGCCGCAAAGAAGCCATTTCTATTCAAGATTGAAATTCCTCATCACTGA 753 0.5153 MAMEALNSPTTATPFTPFEEPNHSYLDTPWTKGKRSKRSRMDQSSCSEEEYLALCLIMLARSGNNNSNSSTAKQILSDTESAPAQAPLTTVKLTHKCSVCDKAFSSYQALGGHKASHRKLALMSAAAEDQNQNQNQTTTTSSAVTTSSASNGGKIKTHDCSICHKSFPTGQALGGHKRCHYEGGVGGGAGSSAVTASEGVGSSHSQHRDFDLNLPAFPDFSKKFLVDEEVSSPLPAAKKPFLFKIEIPHH 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01803 250 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Vivi3g01803 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 180 IPR013087 -
Vivi3g01803 250 Gene3D Classic Zinc Finger 93 180 - -
Vivi3g01803 250 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 34 216 IPR044653 GO:0003700
Vivi3g01803 250 SMART c2h2final6 95 117 IPR013087 -
Vivi3g01803 250 SMART c2h2final6 158 180 IPR013087 -
Vivi3g01803 250 MobiDBLite consensus disorder prediction 1 43 - -
Vivi3g01803 250 SUPERFAMILY beta-beta-alpha zinc fingers 95 180 IPR036236 -
Vivi3g01803 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 117 IPR013087 -
Vivi3g01803 250 MobiDBLite consensus disorder prediction 1 18 - -
Vivi3g01803 250 ProSitePatterns Zinc finger C2H2 type domain signature. 160 180 IPR013087 -
Vivi3g01803 250 MobiDBLite consensus disorder prediction 127 153 - -
Vivi3g01803 250 Pfam C2H2-type zinc finger 95 119 - -
Vivi3g01803 250 Pfam C2H2-type zinc finger 158 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01803 Vivi-Chr3 29221794 29222832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01803 1 247 C2H2 Transcription Factor Family AT1G27730 47.082 2.53e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi3g01803 zf-C2H2_6 1.7e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01803 3 29221794 29222832 Vivi3g01803 3 29221794 29222832 ECH
Vivi4g05550 4 190610135 190611280 Vivi3g01803 3 29221794 29222832 PCT