Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00580 ATGGACCGACGGTGGCCGTGGAAGAAAAAGTCGTCTGATAAGGTTTTGAATGAGAAAACAGAAGGTTTGGTAGATTCCTCGGATGCTTCCAATCAGGATAATACCAAGAAATCGAATTATGTTCAAATTTCTGTGGAGTCGTATAAGCATCTGTCTGAATTGGAGGATCAAGTGAAGTCATATGAGGAAAAAGTGAAGACGTATGACGAACAAGTTCAGACATATGAGGAAAAAGTTCAGACGCTTGAAGATGAGATCAAGGAAATGAATGAAAAGCTTTCGGTGGCGAACTCTGAGATCAATACTAAGGAAAGCATGGTAAAACAACATGCTAAAGTAGCCGAAGAAGCTGTCTCAGGATGGGAAAAGGCGGAAGCTGAGGCTTTGGCGTTGAAAGATCATCTAGAATCAGTCACTCTTTCGAAACTCACTGTCGAGGACCGCGCATCGCATTTAGATGGTGCTCTTAAAGAGTGTATGCGACAGATACGGAACCTTAAGGAAGAACATGAACAGAAAATTCAGAAAGTTGCTCTGTCGAAAACCAAGCAATTGGACAAGATTAAGGGGGAGCTAGAGGCTAATATAGCTAGTTTTGAACAGAAACTCCGGAGGTCTGTTGCGGAAAATGGAGCGCTGTCGAGGTCCTTGCAGGAGCGGTCTAACATGCTAATCCAAATAAGCGAAGAAAAAGCTCATGCTGAAGCTGAAGTTGAGCAGCTTAAGAGCAATGTAGAGTTGTGTGAGAGAGAAATTAATTCACTTAAATATGAACTTCATGTTTCTTCCAAAGAGCTTGAAATTCGCAATGAAGAAAAAAACATGAGTATGAGGTCTGCAGAAGCGGCTAACAAGCAGCATATGGAGGGTGTAAAGAAAATTGCTAAGTTAGAAGCTGAGTGCCAAAGACTACGCGGACTAGTTCGGAAAAAGTTACCTGGTCCGGCTGCACTTGCACAAATGAAGCTAGAAGTTGAAAATCTTGGCCGAGATTACGGAGAAAGTCGGTTAAAGAAATCGCCTGTGAAGCCTGCTTCCCCTAATCCGTCCCCATTACCTGAGTTCTCCCTAGAGAATGTACAGAATTTCCAGAAGGAGAATGAATTTCTTACGGAGCGTTTATTTGCAATGGAAGAAGAAACAAAGATGCTGAAAGAAGCGTTGGCTAAACGGAACAGCGAATTGCAGGCCTCAAGAAGTACGTGTGCCAAAACACTGAGCAAACTTCAAAGTTTGGAAGCACAACATCAGAATGGATCTCCAAAATCCATCATGCATGTAACTCATGAAAGCATTTATAGTCATAACGCAAGCATTGCACCAAGCTTGGTTTCGATGTCTGAAGATGGAAATGATGATGCAGGAAGTGTTGCCGAGTCTTGGACTACAACAATGGCATCTGGGCCATCCCCTCAAATTACTAAAAAATGTACTGAGGAATCAAGCAAATCCGAAACCATTCAAAAGTTGGAACTAATGGACGACTTTCTGGAAGTTGAGAAGTTAGCTCGTCTGTCAATTGATTCCAACATAGATGCGACAGTTTCATTACCTTCAAACAATAAGGAAACTGATGGTGTGGCCAATGATATATCACAAGTCAGCACTGGCAATGTTGGCGATTCAAATTCATTGCCAAATCAAGTGTCTTCGGGTGCTTTGACATCAGCACCTGATCCCCAATCTAATGTTGGTAGCTTATTAACAGAGCTTAGATCAAGAATATTATTAGTTTTTGAGTCCATTGCTAAGGATACTGATATCGGAAAGATCGTTGAGGATATTAAACACGTGCTTGATGATTCTCATGACACTGCCCCTTCTGAAGCCACATGTGATAGGCAGAATAATCCTGAAGATGCCGGCTTAAACCTTGAAAATGAAACCATTTCTTCCCTGCAGCGCAAAGAATATGTGCAGATAACTTCAGATTTAGAAGCTGCGATTTCTCATATCCATGACTTTGTATTGTTACTTGGCAAAGAAGCAATTCCATTTCACGACGTATCTTCTGATGGAAATGTTATGAGCCAAAAGATTGAGGAGTTTTCTGTCACCTTTAATAAAGTTTTATGCAGCGATGCAAGTATGTCACAGTTTGTTCTTGAACTGTCTTACGTTTTGGCTAAAGCAAGTGAACTCAGATTTAGTGTCCTTGGCTACAAGGGCACTGAAGCTGAAACTAACAGTCTCGATTGCATAGATAAGATTGCTTTGCCTGAAAATAAGTTAGTTCAAGAAAATTCATCCGGAGAAAGGTATCAAAATGGTTGCTCCCGTGTTCTTAATCCTGATTTTCCTGATGATGGAAATTTGGTTTCGGGCTATAATGTGAACATGGCATCACAAAAACTTTCATCAGAAGAATTTGAAGAATTGAAACTAGAGAAAGAGAAAGTAGCAACAGATCTGTCAATATGTGCCGAGAATCTTGAGGCAACCAAGTCTCAATTGCTAGAAACTGAGCAACTTCTAGCAGAAGTCAAATCACAACTAGTTTCGGCTCAAAGTTCAAATAGCTTGGCTGAGACGCAGCTAAAGTGTATGACAGAGTCGTACAAGTCACTTGAAACACGTGCCCAGGAGTTCGAAGCTGAAGCGAACCGTTTGCAAAGTACGATAGAAACTCTGGAGAATGAGCTTCAAGAAGAAAAGAAGGCTCACAAAGCCGCTTTGGAAAAGAGCAAGGAGTTCGAGGAGCAGTTACTAAGGATTGAGAGCTTAACAGCTGAAAATGACATCAAGTCTACGAAGGAGAGAGATTTGGCAGCCGCGGCCGAAAAGCTAGCCGAGTGTCAAGAAACCATATTCCTTCTGGGAAAGCAGTTAAATGCTATCCACCCTCAAAGTCCAAATTCTCAAGAAGTAGTTCACTTGGAGATGAACAGTGCCACTTCTTCTTTTGTCCAAAGACTGAGTTCAGATTCCCCCTTGCATTTCTCCAATGGTTTATTTGTCCCATCAGACAATGATTCAAACATACCGGCACCGGCACCGGCACCGGCCAGATCTCCGGCACCACTTCCAAAATCAAAACCGAAACACAGACCTACGAAATCAGCCTCTTCAACTGGTTCTGTCACTACGCCGGAGAAACATGGACGGGGATTTAGTAGATTCTTTTCATCAAAAGGGAAGCCTGGTTATTGA 3150 0.4203 MDRRWPWKKKSSDKVLNEKTEGLVDSSDASNQDNTKKSNYVQISVESYKHLSELEDQVKSYEEKVKTYDEQVQTYEEKVQTLEDEIKEMNEKLSVANSEINTKESMVKQHAKVAEEAVSGWEKAEAEALALKDHLESVTLSKLTVEDRASHLDGALKECMRQIRNLKEEHEQKIQKVALSKTKQLDKIKGELEANIASFEQKLRRSVAENGALSRSLQERSNMLIQISEEKAHAEAEVEQLKSNVELCEREINSLKYELHVSSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKLEVENLGRDYGESRLKKSPVKPASPNPSPLPEFSLENVQNFQKENEFLTERLFAMEEETKMLKEALAKRNSELQASRSTCAKTLSKLQSLEAQHQNGSPKSIMHVTHESIYSHNASIAPSLVSMSEDGNDDAGSVAESWTTTMASGPSPQITKKCTEESSKSETIQKLELMDDFLEVEKLARLSIDSNIDATVSLPSNNKETDGVANDISQVSTGNVGDSNSLPNQVSSGALTSAPDPQSNVGSLLTELRSRILLVFESIAKDTDIGKIVEDIKHVLDDSHDTAPSEATCDRQNNPEDAGLNLENETISSLQRKEYVQITSDLEAAISHIHDFVLLLGKEAIPFHDVSSDGNVMSQKIEEFSVTFNKVLCSDASMSQFVLELSYVLAKASELRFSVLGYKGTEAETNSLDCIDKIALPENKLVQENSSGERYQNGCSRVLNPDFPDDGNLVSGYNVNMASQKLSSEEFEELKLEKEKVATDLSICAENLEATKSQLLETEQLLAEVKSQLVSAQSSNSLAETQLKCMTESYKSLETRAQEFEAEANRLQSTIETLENELQEEKKAHKAALEKSKEFEEQLLRIESLTAENDIKSTKERDLAAAAEKLAECQETIFLLGKQLNAIHPQSPNSQEVVHLEMNSATSSFVQRLSSDSPLHFSNGLFVPSDNDSNIPAPAPAPARSPAPLPKSKPKHRPTKSASSTGSVTTPEKHGRGFSRFFSSKGKPGY 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00580 1049 MobiDBLite consensus disorder prediction 23 38 - -
Vivi3g00580 1049 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 1044 - -
Vivi3g00580 1049 MobiDBLite consensus disorder prediction 335 354 - -
Vivi3g00580 1049 Coils Coil 846 901 - -
Vivi3g00580 1049 MobiDBLite consensus disorder prediction 989 1049 - -
Vivi3g00580 1049 MobiDBLite consensus disorder prediction 602 622 - -
Vivi3g00580 1049 Coils Coil 263 300 - -
Vivi3g00580 1049 Coils Coil 915 935 - -
Vivi3g00580 1049 SUPERFAMILY Tropomyosin 50 269 - -
Vivi3g00580 1049 Coils Coil 811 831 - -
Vivi3g00580 1049 MobiDBLite consensus disorder prediction 1 21 - -
Vivi3g00580 1049 MobiDBLite consensus disorder prediction 1 38 - -
Vivi3g00580 1049 SUPERFAMILY Tropomyosin 53 105 - -
Vivi3g00580 1049 Pfam Filament-like plant protein, long coiled-coil 103 950 IPR008587 -
Vivi3g00580 1049 Coils Coil 149 183 - -
Vivi3g00580 1049 MobiDBLite consensus disorder prediction 514 563 - -
Vivi3g00580 1049 Coils Coil 224 258 - -
Vivi3g00580 1049 Coils Coil 360 380 - -
Vivi3g00580 1049 Coils Coil 189 209 - -
Vivi3g00580 1049 Coils Coil 51 106 - -
Vivi3g00580 1049 SUPERFAMILY Tropomyosin 788 946 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00580 Vivi-Chr3 9563297 9568334 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00580 3 9563297 9568334 Vivi3g00580 3 9563297 9568334 ECH
Vivi4g05894 4 195843199 195848708 Vivi3g00580 3 9563297 9568334 PCT