Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00513 ATGTATCCCAATCATTCATTCTCATCGGTGTCTTATGCGGATATGTTCACCGCGAGCCCTCTGTTACCTCACAACTACTACAACGAATCTGTTGTAGGAGAACAAAATGAGACAGTGACTATGCAGTCCATTGATCAACATTCTGATCCTTGCAACTCTCATTTAGATTGTGACCAAAATATACAATGCCAAGGGCTATCTCTTACTCTAGGGACACTTTTGCCTTCTACATCATCTATCCCTCCATTTCAATACCAGTATCAGGACACCGGTTTTGTATCACTCATGAATGATACTTGTCTTCCAAAGGGAACTACAATATCTAATGATGATGAGTTGAAAACTGCTGAATGTATGGCATCCATATCTTCTGGAGGTTTTCATGACATTCCCAAACGGGAAAGTTTTCACGACTATCATCCTTCCGATCAATGTATGCAGGGCTCATCGGGATTTTCTAACATTTTCTTAAATTCCGAATATCTGAAGGCTGCACAGGAGTTACTCGATGAGCTGGTTAATGTCCGAAAGCAACGTGGAATGGAAAAACAAGAAAAAGTACGCGAAATTGGATTAAATAACTCAAAAGAAGCTGATGGAAAATCTACTACTCAGTCTACGCAAATATCTTCAGGTCCCAATGATTCTAATTCCAATCCTTCTAGTCAATTATCCTCAGCAGAAAGGCAAAATTGGTTGGATAAGAAGACAAAACTTCTGTCCTTCTTGGATGAGGTAGATAAGAGATACAGACAATACTGCCATCAAATGCAGATTGTGGTCTCATCTTTAAACATGGTTGCTGGCTGTGGAGCAGCAGAACCATATACTACACTTGCATTACGAACAATTTCAGGTCATTTTCGTTGCCTGCGCGATGCAATCAGCACCCAAATTCAAGTCATTCAAAGAAACCTTGGGGAACAAGAAGGAATCCCTCGTCTCAGATATGTGGATCAACAGCTTAGACAGCAGAAGGAACTTCAGCATCTTGGTGTTATGCGGCACGCTTGGAGGCCTCAAAGAGGACTTCCTGAAAACTCCGTTTCAATACTTCGTGCCTGGCTCTTCGAGCATTTTCTTAATCCTTACCCCAAGGATTCGGAGAAAATAATGCTAGCTACGCAAACTGGTTTGACAAGGAATCAGGTGGCGAATTGGTTCATTAACGCGCGTGTGCGTCTTTGGAAACCAATGGTTGAGGAAATATACAAAGAAGAGTTTGGTGATTCTGAGATAAACTACAATAATTCATCTGAAAATCACCTCATCAAAGGTAAAAGAGATTATTATTATACTCAAGAAACTGAGTCACAGGACAATGTACAAACTATTACTATTGATAGTGTACAAGCCTATTCCACTAAAGAACATGCAATGGATTATGAAAGTAAAAAATTGCATGGTGGTAGTAACGAAAGGTTCAGCGTGAAAAATGGCTTTTATTCAGAAATAGCTTGTGATACTGCCACATATGATTTATCAGAGATAGGTGGTGGCCACCACCACCAACACCACCAACAGCAACAACAGCAACATGTCTCTCTTTCATTGGAGTTGAGGAACTGTGAAAACGATGGATTAGCCACATCACAAGATGCCAATCACAAAAGACACAATAATAATAATAATATTAAAAATAATAATCAGATATTGTCTTCTTCTTCTTCTGATATAGTAGACTATCATTTCACAGATTCAGGAAAGCAACAACACAGGTTTGGCAATACTCATTTGTTGCATGAGTTTGTCGTATGA 1758 0.3953 MYPNHSFSSVSYADMFTASPLLPHNYYNESVVGEQNETVTMQSIDQHSDPCNSHLDCDQNIQCQGLSLTLGTLLPSTSSIPPFQYQYQDTGFVSLMNDTCLPKGTTISNDDELKTAECMASISSGGFHDIPKRESFHDYHPSDQCMQGSSGFSNIFLNSEYLKAAQELLDELVNVRKQRGMEKQEKVREIGLNNSKEADGKSTTQSTQISSGPNDSNSNPSSQLSSAERQNWLDKKTKLLSFLDEVDKRYRQYCHQMQIVVSSLNMVAGCGAAEPYTTLALRTISGHFRCLRDAISTQIQVIQRNLGEQEGIPRLRYVDQQLRQQKELQHLGVMRHAWRPQRGLPENSVSILRAWLFEHFLNPYPKDSEKIMLATQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGDSEINYNNSSENHLIKGKRDYYYTQETESQDNVQTITIDSVQAYSTKEHAMDYESKKLHGGSNERFSVKNGFYSEIACDTATYDLSEIGGGHHHQHHQQQQQQHVSLSLELRNCENDGLATSQDANHKRHNNNNNIKNNNQILSSSSSDIVDYHFTDSGKQQHRFGNTHLLHEFVV 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00513 585 CDD homeodomain 338 399 IPR001356 GO:0003677
Vivi3g00513 585 SMART HOX_1 338 402 IPR001356 GO:0003677
Vivi3g00513 585 Coils Coil 158 178 - -
Vivi3g00513 585 MobiDBLite consensus disorder prediction 196 228 - -
Vivi3g00513 585 Gene3D - 335 412 - -
Vivi3g00513 585 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 108 419 - -
Vivi3g00513 585 MobiDBLite consensus disorder prediction 180 195 - -
Vivi3g00513 585 SMART prehox3 150 297 IPR006563 -
Vivi3g00513 585 Pfam Associated with HOX 157 296 IPR006563 -
Vivi3g00513 585 Coils Coil 506 526 - -
Vivi3g00513 585 SUPERFAMILY Homeodomain-like 339 404 IPR009057 -
Vivi3g00513 585 MobiDBLite consensus disorder prediction 180 228 - -
Vivi3g00513 585 ProSiteProfiles 'Homeobox' domain profile. 335 398 IPR001356 GO:0003677
Vivi3g00513 585 MobiDBLite consensus disorder prediction 528 551 - -
Vivi3g00513 585 Pfam Homeobox KN domain 355 394 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00513 Vivi-Chr3 8777373 8781034 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vivi3g00513 POX 2.9e-46 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00513 3 8777373 8781034 Vivi3g00513 3 8777373 8781034 ECH
Vivi3g00513 3 8777373 8781034 Vivi4g05850 4 194977623 194981504 PCT