Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00512 ATGTCTAACTCAATGACCCATCAAAATCAGTTTGAGAACCAAGATTTACTAGGTAGTGGTGGTTATGTTTCATCTTCTTCTTCTTTAAGGAACAACAATGCTTATTCTCAAACATTCCATCACAATATTGAACAGCTATCACAAGGTTCTGAAATGAGTCATACAAGACATTTGATGGATCTGCTTGGTGCAGCAAACGACAACAACAATCATCAAACTCATCAACAAGGTTTATCACTTTCTCTAGGCTCTCACATGCTTGTTGTTCCTACTTCTGATGAATACAGAAACCGTTCCTTGAATCAAGGTCTTATGATTAACCCAACATACTTCATGTCTGCTCAAGAACAGACACGTGATCAACCTGTGGTGGAGAATAATAATAATAATAATAATCTTACAAGTGATTATTTTTATGGAAGTTTTGGTTCAGGTGGTTCTTCTAATAACTCATTGTTGAACCGTTCTACTTCTACTTCTTATGGAAATGAGAGTTTTGGTTCTGTTATTGGAAACTCTAGATATCTTAAACCGGTTCAGTCGCTTCTTGAAGATCTTGTTGATGTTGGTGGAAATGTGATTGATAGAATGAATGAAAAGTATGCTGAGAAACTGTTTCATGCAAGTAGAACTGGTGCTAGAACACTTTCTTCTGAGCTTAAAGCTGAGTTGAGGATTCATGGACATTTGTTGGCTGATAAACATGAACATCAAGTCAAAATTGCCAAGCTCATTTCTTTGTTGGATGAGGTTGAGAGTAGATATGAGAAATATTATCATCAAATGGAAGAAGTGGTGTCATCTTTTGAAATGATAGCAGGTTTAGGAGCTGCTAAATGTTACACTGCTTTGGCACTTCAAGCAATGTCTAGACATTTTTGTAGCTTAAGAGATGCAATAATGTCACAAATAAATGTTGAGAAAAGAAAACTGTTTCAAGATGTACCAAAAATCAACAATGGATTATCTCAACTTAGTTTATTTGAGAGAGAAAACAATAGTAACAACAGACAGAATAGAATGTCTCTTCAACAACTTGGAATCATTCAGAATCAAAGACAAGTTTGGAGACCTATTAGAGGCTTACCTGAAACCTCTGTTGCAATTCTTCGTGCTTGGTTGTTTGAGCATTTTCTTCATCCGTATCCTAATGATTCTGAGAAATTAATGCTGGCTTCGCAAACCGGTTTAACTAAAAACCAAGTGTCAAATTGGTTCATAAATGCGAGGGTAAGGTTATGGAAACCAATGATAGAAGAAATGTACAAAGAAGAGTTTGGAGACTCATCTGAAGACTCCAATCCACAAGCTAACAATTACATGTCAAGAGAAGATGCAACAGACTGTGTGGAGGATTAG 1359 0.3606 MSNSMTHQNQFENQDLLGSGGYVSSSSSLRNNNAYSQTFHHNIEQLSQGSEMSHTRHLMDLLGAANDNNNHQTHQQGLSLSLGSHMLVVPTSDEYRNRSLNQGLMINPTYFMSAQEQTRDQPVVENNNNNNNLTSDYFYGSFGSGGSSNNSLLNRSTSTSYGNESFGSVIGNSRYLKPVQSLLEDLVDVGGNVIDRMNEKYAEKLFHASRTGARTLSSELKAELRIHGHLLADKHEHQVKIAKLISLLDEVESRYEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAIMSQINVEKRKLFQDVPKINNGLSQLSLFERENNSNNRQNRMSLQQLGIIQNQRQVWRPIRGLPETSVAILRAWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGDSSEDSNPQANNYMSREDATDCVED 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00512 452 CDD homeodomain 356 417 IPR001356 GO:0003677
Vivi3g00512 452 SUPERFAMILY Homeodomain-like 362 424 IPR009057 -
Vivi3g00512 452 SMART prehox3 164 302 IPR006563 -
Vivi3g00512 452 ProSiteProfiles 'Homeobox' domain profile. 375 416 IPR001356 GO:0003677
Vivi3g00512 452 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 78 436 - -
Vivi3g00512 452 SMART HOX_1 356 420 IPR001356 GO:0003677
Vivi3g00512 452 MobiDBLite consensus disorder prediction 425 452 - -
Vivi3g00512 452 Gene3D - 350 431 - -
Vivi3g00512 452 MobiDBLite consensus disorder prediction 1 24 - -
Vivi3g00512 452 Pfam Associated with HOX 169 301 IPR006563 -
Vivi3g00512 452 Pfam Homeobox KN domain 373 412 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00512 Vivi-Chr3 8758783 8761324 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vivi3g00512 POX 6.6e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00512 3 8758783 8761324 Vivi3g00512 3 8758783 8761324 ECH
Vivi4g05850 4 194977623 194981504 Vivi3g00512 3 8758783 8761324 PCT
Vivi3g00512 3 8758783 8761324 Vivi3g00469 3 8019446 8022119 PCT