Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00469 ATGTATCCCAATCATTCATTCTCATCAGTGTCTTACGCGGATATGTTCACCGCGAGCCCTCTGTTACCTCACAACTACTACAACGAATCTGTTGTAGGAGAACAGAATGAGGCAGTGACTATAAAGTCCATTGATCAACTTTCTGATCCTTGCAACTCTCATTTAGATTGTGACCAAAATATACAATGTCAAGGGTTATCTCTTACTCTAGGGACACTTTTGCCTTCTACATCATCTATCCCTCCATTTCAATACCAGTATCAGGACACCGGTTTTGTATCACTCATGAATGATACTTGTCTTCCAAAGGGAACTACAATATCTAATGATGATGAGTTGAAAACTGCTGAATGTATGACATCTATATCTTCTGGAGGTTTTCATGACATTGCCAAAACGGAAAGTTTTCATGACTATCACCCTTCAGATCAATGCCTGCAGGGCTCGTCATCGGGATTTTCTAACATTTTCTTAAACTCCCAATATCTGAAGGCTGCACAGGAGTTACTCGATGAGCTGGTTAATGTCCGAAAGCAACGTGGAATGGAAAAACAAGAAAAAGTACGCGAAATTGGATTAAATAACTCAAAAGAAACTGATGGAAAATCTACTACTCAGTCTACGCAAATATCTTCAGGCCCTAATGATTCTAATTCCAATCCTTCTAGTCAATTAACCTTAACAGAGAGGCAAAATTGGTTGGATAAGAAGACAAAACTTCTGTCCTTCTTGGATGAGGTAGACAAGAAATACAGACAATACTGCCATCAAATGCAGATTGTGGTCTCATCTTTAAACACGGTTGCTGGCTGTGGAGCAGCAGAACCATATACTACACTTGCATTACGAACAATTTCACGCCATTTTCGTTGCCTGCGCGATGCAATCAGCACCCAAATTCAAGTGATTCAAAGAAACCTAGGGGAACAAGAAGGAATCCCTCGTCTCAGATATGTGGATCAACAGCTTAGACAGCAAAAGGAACTTCAGCATCTTGGTGTTATGCGGCACGCTTGGAGGCCTCAAAGAGGACTTCCTGAAAACTCCGTTTCAATACTTCGTGCCTGGCTCTTCGAGCATTTTCTTAATCCTTACCCCAAGGATTCGGAGAAAATAATGCTAGCTACGCAAACTGGTTTGACAAGGAATCAGGTGGCGAATTGGTTCATTAACGCGCGAGTGCGTCTTTGGAAACCAATGGTTGAGGAAATATACAAAGAAGAGTTTGGTGATTCTGAGATAAACTACAATAATTCATCTGAAAATCACCTCATCAAAGGTAAAAGAGATTATTATTATACTCAAGAAACTGAGTCACAGGACAATGTACAAACTATTACTATTGATAGTGTACAAGCCTATTCCACTAAAGAACATGCAATGGATTATGAAAGTAAAAAATTGCATGGTGGTAGTAACGAAAGGTTCAGCGTGAAAAATGGCTTTTATTCAGAAATAGCTTGTGATACTGCCACATATGATTTATCAGAGATAGGTGGTGGCCACCACCAACAACACCACCAACAGCAACAACAGCAACATGTCTCTCTTTCATTGGAGTTGAGGAACTGTGAAAACGATGGGTTAGCCACATCACAAGATGCCAATCACAAAAGACACAATAATAATAATATTAAAAATAATAATCAGATATTGTCTTCTTCTTCTTCTTCTGATATACTAGTAGACTATGATTTCACAGATTCAGGAAAGCAACAACACAGGTTTGGCAATACTCATTTGTTGCATGAGTTTGTAGTATGA 1764 0.3934 MYPNHSFSSVSYADMFTASPLLPHNYYNESVVGEQNEAVTIKSIDQLSDPCNSHLDCDQNIQCQGLSLTLGTLLPSTSSIPPFQYQYQDTGFVSLMNDTCLPKGTTISNDDELKTAECMTSISSGGFHDIAKTESFHDYHPSDQCLQGSSSGFSNIFLNSQYLKAAQELLDELVNVRKQRGMEKQEKVREIGLNNSKETDGKSTTQSTQISSGPNDSNSNPSSQLTLTERQNWLDKKTKLLSFLDEVDKKYRQYCHQMQIVVSSLNTVAGCGAAEPYTTLALRTISRHFRCLRDAISTQIQVIQRNLGEQEGIPRLRYVDQQLRQQKELQHLGVMRHAWRPQRGLPENSVSILRAWLFEHFLNPYPKDSEKIMLATQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGDSEINYNNSSENHLIKGKRDYYYTQETESQDNVQTITIDSVQAYSTKEHAMDYESKKLHGGSNERFSVKNGFYSEIACDTATYDLSEIGGGHHQQHHQQQQQQHVSLSLELRNCENDGLATSQDANHKRHNNNNIKNNNQILSSSSSSDILVDYDFTDSGKQQHRFGNTHLLHEFVV 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00469 587 MobiDBLite consensus disorder prediction 197 225 - -
Vivi3g00469 587 Coils Coil 587 587 - -
Vivi3g00469 587 Coils Coil 507 527 - -
Vivi3g00469 587 MobiDBLite consensus disorder prediction 529 551 - -
Vivi3g00469 587 CDD homeodomain 339 400 IPR001356 GO:0003677
Vivi3g00469 587 SMART prehox3 151 298 IPR006563 -
Vivi3g00469 587 Coils Coil 159 179 - -
Vivi3g00469 587 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 131 420 - -
Vivi3g00469 587 SUPERFAMILY Homeodomain-like 340 405 IPR009057 -
Vivi3g00469 587 Pfam Associated with HOX 158 297 IPR006563 -
Vivi3g00469 587 MobiDBLite consensus disorder prediction 184 225 - -
Vivi3g00469 587 Gene3D - 336 413 - -
Vivi3g00469 587 ProSiteProfiles 'Homeobox' domain profile. 336 399 IPR001356 GO:0003677
Vivi3g00469 587 Pfam Homeobox KN domain 356 395 IPR008422 GO:0003677|GO:0006355
Vivi3g00469 587 SMART HOX_1 339 403 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00469 Vivi-Chr3 8019446 8022119 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vivi3g00469 POX 5.5e-46 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00469 3 8019446 8022119 Vivi3g00469 3 8019446 8022119 ECH
Vivi3g00512 3 8758783 8761324 Vivi3g00469 3 8019446 8022119 PCT