Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00424 ATGGATTCATCAACACTCTCAACTCTTACTACAACTCTTTCTAGAACCAGAAACACTGTTTTCTTAGGTGAAACTTCAAGATTCTGTACCATTCAATCACCCAAAACTTCTCAATCTCGCTTCATTCTTAGAAACTTCAAGCCTACAACAACTCATGCTGTTCTCACTACAGGGATCAATGATTTTGAAGAATCCACGACTTTTCAAGATGGACCCTATTTTGATACTCCTAAAGCTGACCCTAAAAGTGTTGCTTCAATCATTTTGGGTGGTGGTGCTGGAACTCGCCTTTTTCCTCTTACTAGCAAAAGAGCTAAACCTGCTGTTCCAATTGGAGGGTGTTATAGGCTTATTGATGTTCCTATGAGCAATTGCATCAACAGTGGGATTAGGAAAATATTCATCTTGACACAGTACAATTCTTTCTCCCTCAACCGGCATTTGTCTCGCGCGTATAATTTTGGAAATGTTTCTACTTATGGGGAGGGTTTTGTGGAGGTATTGGCTGCGACTCAAACGTCTGGAGAAGCTGGGAAGAAGTGGTTCCAAGGGACAGCGGATGCTGTGAGGCAATTTTTATGGGTTTTTGAGGATGCTAAGACTAAGAATGTTGAGCATATATTGATACTTTCCGGTGATCATCTTTACCGGATGAACTATATGGATTTTGTCCAGAAACACATCGACACAAATGCTGATATCACAGTTTCATGTCTTCCCATGGACGACAGTCGAGCATCAGATTATGGGTTGATGAAAATTGACGGAACGGGACGGATTATACAGTTTGCGGAAAAACCTAAAGGATCAGATTTGAAAGCAATGCGTGTTGATACAACGGTTCTTGGGTTATCTCCCGAAGAAGCAAAGGAACAGCCTTATATTGCATCTATGGGTGTCTACGTGTTTAGAACCGAGACCCTACTTGAACTATTAAAATTGAACGGTTCTACTTGCAATGACTTCGGATCTGAAATTATCCCGTCAGCTGTTAACGGGCACAATGTCCAGGCCTTTTTGTTCAATGACTACTGGGAAGATATTGGAACCATAAAGTCCTTCTTTGACGCAAATCTGGCCCTAACAGAACCGTATCCAAAGTTTCAATTCTATGATCCAAAGACACCTTTCTTCACTTCCCCAAGATTCCTACCACCCACTAAAGTAGAAAAATGCAAGATTGTGGATGCAATTATTTCTCATGGTTGCTTCTTGAGAGAATGTAGTGTTCAACATTCTATTGTTGGAATCCGCTCCCGTTTGGAGTCTGGTGTGGAGCTTCAGGATACCATGATGATGGGTGCTGACTACTATCAAACTGAGGCTGAAATTGCATCTCTGCTGGCAGAAGGAAATGTCCCAATTGGTGTTGGAGAAAATACCAAAATCAGGAATTGTATCATCGATAAGAATGCAAAAATCGGAAGAAATGTTATCATTACAAATGCGGATGGTGTTGAAGAAGCAGATAAAACTAAAGAAGGATTATACATTAGGTCCGGCATCACTGTTATTTTGAAGAATGCAACTATTAAAGACGGAACAGTTATCTGA 1554 0.4073 MDSSTLSTLTTTLSRTRNTVFLGETSRFCTIQSPKTSQSRFILRNFKPTTTHAVLTTGINDFEESTTFQDGPYFDTPKADPKSVASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQYNSFSLNRHLSRAYNFGNVSTYGEGFVEVLAATQTSGEAGKKWFQGTADAVRQFLWVFEDAKTKNVEHILILSGDHLYRMNYMDFVQKHIDTNADITVSCLPMDDSRASDYGLMKIDGTGRIIQFAEKPKGSDLKAMRVDTTVLGLSPEEAKEQPYIASMGVYVFRTETLLELLKLNGSTCNDFGSEIIPSAVNGHNVQAFLFNDYWEDIGTIKSFFDANLALTEPYPKFQFYDPKTPFFTSPRFLPPTKVEKCKIVDAIISHGCFLRECSVQHSIVGIRSRLESGVELQDTMMMGADYYQTEAEIASLLAEGNVPIGVGENTKIRNCIIDKNAKIGRNVIITNADGVEEADKTKEGLYIRSGITVILKNATIKDGTVI 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00424 517 NCBIfam glucose-1-phosphate adenylyltransferase 85 482 IPR011831 GO:0005978|GO:0008878
Vivi3g00424 517 Pfam Nucleotidyl transferase 86 362 IPR005835 GO:0009058
Vivi3g00424 517 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 181 189 IPR005836 GO:0005978|GO:0008878
Vivi3g00424 517 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 90 109 IPR005836 GO:0005978|GO:0008878
Vivi3g00424 517 SUPERFAMILY Nucleotide-diphospho-sugar transferases 84 478 IPR029044 -
Vivi3g00424 517 CDD LbH_G1P_AT_C 385 511 - -
Vivi3g00424 517 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 74 382 IPR029044 -
Vivi3g00424 517 Gene3D Hexapeptide repeat proteins 383 517 - -
Vivi3g00424 517 CDD ADP_Glucose_PP 87 348 - -
Vivi3g00424 517 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 33 517 IPR011831 GO:0005978|GO:0008878
Vivi3g00424 517 FunFam Glucose-1-phosphate adenylyltransferase 383 517 - -
Vivi3g00424 517 FunFam Glucose-1-phosphate adenylyltransferase 69 382 - -
Vivi3g00424 517 SUPERFAMILY Trimeric LpxA-like enzymes 379 517 IPR011004 -
Vivi3g00424 517 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 296 306 IPR005836 GO:0005978|GO:0008878
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00424 Vivi-Chr3 7351641 7355254 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00424 3 7351641 7355254 Vivi3g00424 3 7351641 7355254 ECH
Vivi3g00424 3 7351641 7355254 Vivi3g00424 3 7351641 7355254 PCT