Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00400 ATGGCTTCGAGCTCGAATTGGACAGCAAAACAAAACAAAAGATTTGAGAACGCATTGGCAATGTTGGAGAAGGACACTCCAGATCGTTGGCAGAAGGTGGCTAGAGCTGTGGGAGGAAAGACAGTAGAAGAAGTGAAAAGACATTATGAGAAGCTTGTTGAAGATGTGAAGCTGATTGAGGAAGGTCATGTTCCACTGCCTAAGTACACAAATAATGGTTGCAATTACATGATGGATCAAGAAAAAAGGATGAAGGCTCTAAGTCTCCAGTAA 273 0.4212 MASSSNWTAKQNKRFENALAMLEKDTPDRWQKVARAVGGKTVEEVKRHYEKLVEDVKLIEEGHVPLPKYTNNGCNYMMDQEKRMKALSLQ 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00400 90 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 75 IPR044636 GO:0003700
Vivi3g00400 90 Gene3D - 1 66 - -
Vivi3g00400 90 Pfam Myb-like DNA-binding domain 5 52 IPR001005 -
Vivi3g00400 90 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
Vivi3g00400 90 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Vivi3g00400 90 SUPERFAMILY Homeodomain-like 5 60 IPR009057 -
Vivi3g00400 90 SMART sant 3 55 IPR001005 -
Vivi3g00400 90 CDD SANT 6 53 IPR001005 -
Vivi3g00400 90 FunFam Transcription factor SRM1 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00400 Vivi-Chr3 6910847 6911434 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi3g00400 Myb_DNA-binding 2.7e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00400 3 6910847 6911434 Vivi3g00400 3 6910847 6911434 ECH
Vivi4g05797 4 194396793 194399298 Vivi3g00400 3 6910847 6911434 PCT