Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06175 ATGGAGGATAATTCTGAGAATTCTAGGGCTTTGAATAGTTCTGGAGTTTCAGATAGGAATCAAAGGCAGAACCCTTTTTCCGGCGAGGGATCGGAGGATTCTAGGTTTAGAAAGGAAAGAGATTGGATTCATGGTGGACTACAGCTTGATCTAAATAAAAACCTAGGAGGGTTTTGTGAGGATGAAGTTGAGAATGACCGTTTCTTTTCTTCGGTAGAATGGGATGATATTAGCTTGAGGCAGTGGTTGGATAAACCCGATCGATCGGTTGATTTCTTCGAATGTTTGCATGTGTTTAGACAAATAGTAGAAATTGTTAATGCGGCGCATTGTCAAGGTGTTGTTGTTCATAACGTGAGGCCTTCGTGCTTTGTCATGTCGTCTTTCAACCATATCTCGTTTATTGAATCGGCTTCTTGTTCGGATACTGGTTCGGATTCTTTAGGAGATGGAATGAATGGCGAACAAGGCGGTGAGGCTAAAACTCCGACGTCTCACTGTCCTCGTGATATGATGCATCCGCAGAGTTTAGGTGGTGAAGATTTTTTGCCTGCCAAGAATTCGATGGCTGCTCGGTCTGATTCTAGTTGCATGCTGTCAAGCGCGGTGTATGCAGCTCGCGCGTCGTTAATAGAAGAAACAGAAGAGAATAAAATGAAAGATCGGAGGAAGGATGAAGAAGTGGAAGTAAAGAAGCAATCGTTTCCGATGAAACAAATACTGCAAATGGAGATGACTTGGTACACTAGTCCTGAAGAGGTTTCCGGTACCCCGAGTTCATGTGCTTCCGATGTTTACAGATTGGGGATTCTTTTATTCGAGCTATTCTGTCCGTTGAGCTCGAGAGAAGAGAAAAGTAGAACAATGTCTAGTCTTAGACATAGAGTTCTTCCACCGCAGTTACTTCTAAAATGGCCTAAGGAAGCTTCATTTTGCTTATGGTTACTACATCCGGACCCTAGCAGTCGTCCAACACTAGGTGAGTTGTTGCAGAGTGAGTTCCTTAATGAACAGCGTGACGATATGGAAGAACGTGAAGCAGCAATAGAGATTAGACAAAAGATAGAAGATCAGGAGTTGTTACACGAATTCCTTTCGTTACTTAAACAAAAAAAACAGGAAGTTGCTGAAAAATTGCAACACACTATCGCTTTTCTGTGTTCGGATATTGAAGAAGTGGCCAAGAAACAAACTAGGTTTAAAGAGATTTCCGGTGTTGAACTAGGGAGTGATGAACGTTCAGCATCAACTTTTCCGTCCATGACAGTTATCGATAGCGAAGATTCTGCGTGTTTAGGAACTAGAAAACGAGTCAGACTAGGTGTGCATGTTGATGAAAGCGACGATAACACAGGGAATGATCAGAAAAGTTCTGGAAGTTTTCTTTCAAAAAGTTCACGACTAATGAAAAACTTCAAGAAACTCGAGTCGGCGTACTTTTTAACACGATGCAAACCAACTTATTCCTCGGGGAGACAGGCGGTTAGACATTCATCTATAGCAAATGATGGGAGAGGGTCTGTTGTCATAAATGAACGAAGTAGCATCAATAGCCTGGCCATGAAAGAGAAAGGAAGAGACGGCGCAAGTGGTTGGATAAACCCTTTCCTCGAGGGTTTGTGCAAGTACTTATCTTTCAGTAAGGTCAAGGTAAAAGCTGACCTGAAGCAAGGCGATCTTTTGCATTCGTCCAACCTAGTATGCTCGCTCAGTTTTGATCGCGACGGAGAATTTTTCGCAACCGCCGGTGTGAATAAAAAAATCAAAATATTTGAATGTGATACAATCATAAACGAGGATCGTGATATCCACTATCCGGTAGTAGAGATGGCTTGCAGGTCAAAATTGAGCAGCTTATGTTGGAATACATACATCAAAAGTCAAATTGCTTCTAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTTACGAGAAGTCAAGTACTATCTGAAATGAGGGAGCACGAGCGGCGAGTGTGGTCGATTGATTTCTCATCAGCAGATCCAACGATGTTGGCAAGTGGAAGCGACGACGGTTGCGTTAAGCTATGGAGTATCAATCAGGGAGTTAGTATTGGCACCATCAAAACAAAGGCGAACGTATGCTGTGTTCAGTTTCCTCTCGATTCTGCTCGTTACCTTGCGTTCGGTTCCGCGGATCACCGGATATATTACTACGATCTACGCAACTTGAGAGCGCCGCTTTGTACTTTAGTCGGACATAATAAGACAGTGAGCTACATCAAGTTTGTAGACAATGTCAACCTTGTCTCCGCGTCCACAGACAACACTTTGAAGCTTTGGGATTTGTCTACGTGTACATCTCGAGTTATAGACTCGCCGATTCAATCGTTCACTGGTCACACAAATGTTAAGAACTTCGTGGGATTATCGGTATCGGACGGTTATATTGCTACTGGCTCAGAGACAAATGAGGTGTTTATATACCACAAGGCCTTCCCTATGCCGGCATTGCAATTCAAGTTTCAGAACACGGATCCGATTTCCGGCCACGAAGTGGACGATGCGGCACAATTTGTCTCCTCGGTTTGTTGGCGCGGTCAGTCGCCAACGTTAATCGCGGCAAACTCGACAGGGAATGTTAAGATTCTGGAGATGGTTTGA 2625 0.4347 MEDNSENSRALNSSGVSDRNQRQNPFSGEGSEDSRFRKERDWIHGGLQLDLNKNLGGFCEDEVENDRFFSSVEWDDISLRQWLDKPDRSVDFFECLHVFRQIVEIVNAAHCQGVVVHNVRPSCFVMSSFNHISFIESASCSDTGSDSLGDGMNGEQGGEAKTPTSHCPRDMMHPQSLGGEDFLPAKNSMAARSDSSCMLSSAVYAARASLIEETEENKMKDRRKDEEVEVKKQSFPMKQILQMEMTWYTSPEEVSGTPSSCASDVYRLGILLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDDMEEREAAIEIRQKIEDQELLHEFLSLLKQKKQEVAEKLQHTIAFLCSDIEEVAKKQTRFKEISGVELGSDERSASTFPSMTVIDSEDSACLGTRKRVRLGVHVDESDDNTGNDQKSSGSFLSKSSRLMKNFKKLESAYFLTRCKPTYSSGRQAVRHSSIANDGRGSVVINERSSINSLAMKEKGRDGASGWINPFLEGLCKYLSFSKVKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKIFECDTIINEDRDIHYPVVEMACRSKLSSLCWNTYIKSQIASSNFEGVVQLWDVTRSQVLSEMREHERRVWSIDFSSADPTMLASGSDDGCVKLWSINQGVSIGTIKTKANVCCVQFPLDSARYLAFGSADHRIYYYDLRNLRAPLCTLVGHNKTVSYIKFVDNVNLVSASTDNTLKLWDLSTCTSRVIDSPIQSFTGHTNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALQFKFQNTDPISGHEVDDAAQFVSSVCWRGQSPTLIAANSTGNVKILEMV 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06175 874 CDD WD40 567 870 - -
Vivi2g06175 874 PRINTS G protein beta WD-40 repeat signature 756 770 IPR020472 -
Vivi2g06175 874 PRINTS G protein beta WD-40 repeat signature 629 643 IPR020472 -
Vivi2g06175 874 PRINTS G protein beta WD-40 repeat signature 672 686 IPR020472 -
Vivi2g06175 874 ProSiteProfiles Trp-Asp (WD) repeats profile. 738 772 IPR001680 GO:0005515
Vivi2g06175 874 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 535 874 - -
Vivi2g06175 874 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 652 689 - -
Vivi2g06175 874 Gene3D - 538 874 IPR015943 GO:0005515
Vivi2g06175 874 Gene3D Transferase(Phosphotransferase) domain 1 75 348 - -
Vivi2g06175 874 ProSiteProfiles Trp-Asp (WD) repeats profile. 652 694 IPR001680 GO:0005515
Vivi2g06175 874 MobiDBLite consensus disorder prediction 145 167 - -
Vivi2g06175 874 SUPERFAMILY WD40 repeat-like 562 871 IPR036322 GO:0005515
Vivi2g06175 874 ProSiteProfiles Protein kinase domain profile. 1 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06175 874 PANTHER PROTEIN SPA1-RELATED 2 38 874 IPR044630 GO:0009640
Vivi2g06175 874 SUPERFAMILY Protein kinase-like (PK-like) 56 349 IPR011009 -
Vivi2g06175 874 Coils Coil 332 352 - -
Vivi2g06175 874 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 738 772 - -
Vivi2g06175 874 Pfam WD domain, G-beta repeat 734 769 IPR001680 GO:0005515
Vivi2g06175 874 Pfam WD domain, G-beta repeat 562 591 IPR001680 GO:0005515
Vivi2g06175 874 Pfam WD domain, G-beta repeat 648 685 IPR001680 GO:0005515
Vivi2g06175 874 SMART serkin_6 16 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06175 874 ProSitePatterns Trp-Asp (WD) repeats signature. 756 770 IPR019775 -
Vivi2g06175 874 SMART WD40_4 645 685 IPR001680 GO:0005515
Vivi2g06175 874 SMART WD40_4 828 872 IPR001680 GO:0005515
Vivi2g06175 874 SMART WD40_4 557 592 IPR001680 GO:0005515
Vivi2g06175 874 SMART WD40_4 688 727 IPR001680 GO:0005515
Vivi2g06175 874 SMART WD40_4 606 642 IPR001680 GO:0005515
Vivi2g06175 874 SMART WD40_4 778 817 IPR001680 GO:0005515
Vivi2g06175 874 SMART WD40_4 731 769 IPR001680 GO:0005515
Vivi2g06175 874 MobiDBLite consensus disorder prediction 1 35 - -
Vivi2g06175 874 MobiDBLite consensus disorder prediction 7 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06175 Vivi-Chr2 195874082 195878653 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06175 642 816 Miscellaneous Gene Families AT5G08390 24.859 7.03e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Vivi2g06175 WD40 0.00025 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06175 2 195874082 195878653 Vivi2g06175 2 195874082 195878653 ECH
Vivi2g06175 2 195874082 195878653 Vivi7g00773 7 44635364 44636935 PCT