Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04773 ATGTTGGAAGCTAGAGACCCTGCGATCAAGCTTTTTGGGAAGACGATTCCGGTGCCGGAGATCTCTTCGGGATCCGGTGACTCTAACGGAGCTCTAGATTCATCTTCTGGTGATGTTGTTGATGAAGGTATCGTTCAGAACCATGCTTCTTCTGTTAACTCTTTGAATACAAATATGGATGAAGAAGAGCGAGAAATTGATGAGGACACAATGGAAGAGGAACCGGCCGAGTATAAGAAGGAAAAAGATGAAGCTCTAACCGAATTGTCAAAAAAGAACACTGATATAAACACTGCTTCAAGATTAGTGGAAGAATCTACTAACCTCTCTGCCGAGGAGGAGCAAAAGAGTAAAGAAGAACAAGCCGAGAATTCACAAGATAAGACACTGAAAAAGCCAGACAAAATACTTCCTTGCCCTCGATGTAATAGCATGGACACCAAATTCTGCTACTACAATAATTACAATGTCAATCAGCCGCGTCATTTCTGTAAGAACTGTCAAAGGTACTGGACTGCTGGTGGAGCCATGAGAAATGTGCCTGTTGGCGCCGGTCGTAGGAAGAACAAGAATCCCGGTTCTCAGTATCGTCAAATAACTGTCGCGGAAGCGGCAGTTCAGAATTCTCAATCCGACATACCGAACGGAGTCCATCATCCTTCCTTGAACTGTAACGGAACTGTCTTTGCTTTCGGGACTGATTCACCCTTGTGTGAATCAATGGAATCTGCGCTGAACCTAGCTGATAAAGGAATTAGCATTTCCCCGAAAAACGGATTTATTAGACCTGAAGAACTAAGAATCCATGTTCCCTATACTAGTGAAGAAAAGCGCAATGATGATTCGAATAAATCTTCTGACGGATCAACGACCCCGACAGAAAATGCAACTGCCAACAATTCTCTAGAACAAGTTATGCCAAATTGTCAAAGCTTCCCACCTCAAGTTCCCTACTACCCTGGTGCCCCTTGGCTTTTTCCGTGGAGTCCAGCTCAATGGAGCTCTCAAGTACAACCACCACCTGCTTTTTTCCCACCAGGATTTGCCGTGCCGCTCTATCCTCCACCAGCTTATTGGGGTTTTACTTTGCCCGGTGCTTGGAACAATCCATGGCTAGCACAACCATCGTCGCCTAATAGTGCAGCCCTTAACTCCGGTCCTAACTCGCCGACCTTAGGGAAGCATTCGAGGGAAGAAAGCACGGCCAAACCAAATGACACAGCAGGTTCTGACGAAGGAAACAATAAAGAAGAAAAGTCCCTTTGGGTTCCCAAAACATTGAGGATTGATGACTTAGGAGAAGCGGAAAAAAGCTCTATATTGACAACTCTAGGGATTGAAAACAATAAGACAGACTTGATTCGCGGGGGAGGTCTTTTCAAAGCATTTGCATCAAAGGGTGACAAAAAAGATGACATGCAAAACTCAAACTCACCAGTCTTGCAGGCCAATCCAGCAGCATTGTCTAGGTCAAATAAATTCCGCGAGACCTCATAA 1497 0.4489 MLEARDPAIKLFGKTIPVPEISSGSGDSNGALDSSSGDVVDEGIVQNHASSVNSLNTNMDEEEREIDEDTMEEEPAEYKKEKDEALTELSKKNTDINTASRLVEESTNLSAEEEQKSKEEQAENSQDKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNPGSQYRQITVAEAAVQNSQSDIPNGVHHPSLNCNGTVFAFGTDSPLCESMESALNLADKGISISPKNGFIRPEELRIHVPYTSEEKRNDDSNKSSDGSTTPTENATANNSLEQVMPNCQSFPPQVPYYPGAPWLFPWSPAQWSSQVQPPPAFFPPGFAVPLYPPPAYWGFTLPGAWNNPWLAQPSSPNSAALNSGPNSPTLGKHSREESTAKPNDTAGSDEGNNKEEKSLWVPKTLRIDDLGEAEKSSILTTLGIENNKTDLIRGGGLFKAFASKGDKKDDMQNSNSPVLQANPAALSRSNKFRETS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04773 498 MobiDBLite consensus disorder prediction 91 106 - -
Vivi2g04773 498 MobiDBLite consensus disorder prediction 21 35 - -
Vivi2g04773 498 MobiDBLite consensus disorder prediction 466 498 - -
Vivi2g04773 498 MobiDBLite consensus disorder prediction 376 395 - -
Vivi2g04773 498 ProSitePatterns Zinc finger Dof-type signature. 139 175 IPR003851 GO:0003677|GO:0006355
Vivi2g04773 498 MobiDBLite consensus disorder prediction 271 296 - -
Vivi2g04773 498 MobiDBLite consensus disorder prediction 107 134 - -
Vivi2g04773 498 MobiDBLite consensus disorder prediction 474 498 - -
Vivi2g04773 498 MobiDBLite consensus disorder prediction 396 419 - -
Vivi2g04773 498 MobiDBLite consensus disorder prediction 376 419 - -
Vivi2g04773 498 PANTHER CYCLIC DOF FACTOR 2 4 498 IPR045174 GO:0003700|GO:0006355
Vivi2g04773 498 MobiDBLite consensus disorder prediction 1 134 - -
Vivi2g04773 498 Coils Coil 103 128 - -
Vivi2g04773 498 Pfam Dof domain, zinc finger 134 191 IPR003851 GO:0003677|GO:0006355
Vivi2g04773 498 Coils Coil 45 72 - -
Vivi2g04773 498 MobiDBLite consensus disorder prediction 73 90 - -
Vivi2g04773 498 ProSiteProfiles Zinc finger Dof-type profile. 137 191 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04773 Vivi-Chr2 166364908 166368047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04773 6 498 C2C2-Dof Transcription Factor Family AT5G39660 41.825 3.89e-105 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi2g04773 zf-Dof 4.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04773 - - mtr:11414470 775.007