Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02052 ATGTCTGAGGTGATTAATGATTCCACCATAAAGCTTTTTGGGAGGACAATTTTTCTAACACACAACACTGATGTCTCTGCCAATGATTCTTCTTCAAAATTTGATCCTTCTCTTTCTCATGAAGATTTCTCTGATCACAGTCCTCATTCATCTTTATCTTCAACTTCTCCACTTGAAGAGAATTCTCCTATGGAACATGGAGCAAATAGATATAAGGAAACATCAATGAAAGAAGTCACCTCAGTGGAAGATGAAGAGGCCTCACAACCAACAACATCTTCAAGCCTTATTGAAAACCCCAAAACCCCCTCATCAGAAACAGAAACTTCTCAGCTGAATTCAACTAAAATTGATGAAATATCGAAAGTCCAAGCTCCAAAGAAACCAGACATAATTGTTCCATGTCCAAGATGCAAAAGTACGGACACAAAGTTTTGCTACTACAACAACTACAACGTCAAACAGCCCCGGCACTTTTGCAAGAACTGTCAGAGATATTGGACTTCTGGAGGAACCACTAGAAAGATGCTTGTAGGCGCGGGTCGCCGCAAGAATAAAATCTCTCCGGTTTCTTCGGATGTATCGCATTATCGTCAAATGAATACTGTCTTTACCTTTGGATCAGATTCTCCTAATATGTCTTCAACTCCACATGACAAGAAAATGAATATTGACTCACATGAAGAAACAGTTGATAAGAGTTATCAAAGTTTTCCTCCACAGTTTCCATGGAACCCTGCAATGTGTTATCCTGTGTCATTTTATCCCAATATAGTACACTATGGTGGTTTCTTGCAACCAATATGGAATGAACAATCTATCCCAACACAATCTTGTGCCCCAAGTAAACCTGTATTAGGGAAACATTCAAGAGATGGGGACATGATCAATCATTCCAACTCAGAGAAAGAAAAGCTTGGATTAGAAAGCAACAACCAAGAAAGGAATGATAGTGTGTTGATTCCTAAGACAATGATAATTGATGACACGAATGAAGTTGCGAAGAGTTCTGTATGGTCAATAATAGGAATCAAGAATGGGAGAGGACTTTTCAAGGGATTTGCGTCTAAGGGCGATGATAAGAGTGATCATATTGTCGAAGTATCCTCATCAGTATTGAAAGCTAACCCTGCAGCTTCATCAAGGTCTCTTATGTTCCATGAGAGGGTTTGA 1173 0.3922 MSEVINDSTIKLFGRTIFLTHNTDVSANDSSSKFDPSLSHEDFSDHSPHSSLSSTSPLEENSPMEHGANRYKETSMKEVTSVEDEEASQPTTSSSLIENPKTPSSETETSQLNSTKIDEISKVQAPKKPDIIVPCPRCKSTDTKFCYYNNYNVKQPRHFCKNCQRYWTSGGTTRKMLVGAGRRKNKISPVSSDVSHYRQMNTVFTFGSDSPNMSSTPHDKKMNIDSHEETVDKSYQSFPPQFPWNPAMCYPVSFYPNIVHYGGFLQPIWNEQSIPTQSCAPSKPVLGKHSRDGDMINHSNSEKEKLGLESNNQERNDSVLIPKTMIIDDTNEVAKSSVWSIIGIKNGRGLFKGFASKGDDKSDHIVEVSSSVLKANPAASSRSLMFHERV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02052 390 ProSiteProfiles Zinc finger Dof-type profile. 133 187 IPR003851 GO:0003677|GO:0006355
Vivi2g02052 390 MobiDBLite consensus disorder prediction 287 311 - -
Vivi2g02052 390 ProSitePatterns Zinc finger Dof-type signature. 135 171 IPR003851 GO:0003677|GO:0006355
Vivi2g02052 390 PANTHER CYCLIC DOF FACTOR 2 1 389 IPR045174 GO:0003700|GO:0006355
Vivi2g02052 390 MobiDBLite consensus disorder prediction 25 121 - -
Vivi2g02052 390 MobiDBLite consensus disorder prediction 65 84 - -
Vivi2g02052 390 MobiDBLite consensus disorder prediction 85 120 - -
Vivi2g02052 390 MobiDBLite consensus disorder prediction 286 314 - -
Vivi2g02052 390 MobiDBLite consensus disorder prediction 48 62 - -
Vivi2g02052 390 Pfam Dof domain, zinc finger 132 186 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02052 Vivi-Chr2 96308912 96310558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02052 104 390 C2C2-Dof Transcription Factor Family AT5G62430 41.967 1.02e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi2g02052 zf-Dof 1.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02052 - - psat:127119499 640.188