Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02024 ATGTCTGAGATGATTAATCTTTCAACCATAAAGCTTTTTGGGACAACCATATTTCTAACACACAACACTCATGATGTCCTTACCAATGATTCTTCTCAACAGAATTCTACAAAACTAGATGATCAAATTGATATGTCACATGACAAATCTCCAAAGAAACAAGACATAACTGTTCCATGTCCAAGATGTAACAGCAAGGACACAAAATTCCGGTACTACAACAACTTGAAAGCCAAACAGCCCAGACACTTCTGCAGAAACTGCCAGAGATACTGGACTTCTGGAGGAATCGCCAGAAAGATGCTTGTAGGAGCAGGTCGCCGTAAGAACAAATTCACTAATTTTCCTTTAGATGTCTTGCATTATTCTCAAATGAGTAATGTCTTGCCCTTTGGATCAAATTCTTCTGATATCTCTTCAACTTCATGGAACCATGCAGTGTGTTATGCCATGTCCTTAGGGAAACATTCTGTGCCAACACAATCTTGTGGCCCAAGTAAACCTGCACTAAGGAAACATTCAAGAGATGGTGACAAGATCATATATTCCAACTCAGAGAAAGAAAACCTTGGCTTAAAAAGAAACAACATAGAAAGACATGATAGTAATGATGAATTGGTTCCTAAGTTACTAAGAGTTGACGACCCTAATGATGTTGTAATGAGTTCTATATGGTCAACAATAGGAATTGAGAATGGGAGAGGAATTTTCAAGGGATTTGGATCTAACTTTCATGACAAGAATCATGTGGTTGAAGCATCTTCATCAGTATTCAAAGTTAACCCTGCAGCTTTACCAAGGTCTATTGTGTTCCATGTGATGATTTGA 828 0.3792 MSEMINLSTIKLFGTTIFLTHNTHDVLTNDSSQQNSTKLDDQIDMSHDKSPKKQDITVPCPRCNSKDTKFRYYNNLKAKQPRHFCRNCQRYWTSGGIARKMLVGAGRRKNKFTNFPLDVLHYSQMSNVLPFGSNSSDISSTSWNHAVCYAMSLGKHSVPTQSCGPSKPALRKHSRDGDKIIYSNSEKENLGLKRNNIERHDSNDELVPKLLRVDDPNDVVMSSIWSTIGIENGRGIFKGFGSNFHDKNHVVEASSSVFKVNPAALPRSIVFHVMI 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02024 275 Pfam Dof domain, zinc finger 57 111 IPR003851 GO:0003677|GO:0006355
Vivi2g02024 275 MobiDBLite consensus disorder prediction 29 55 - -
Vivi2g02024 275 SUPERFAMILY Zinc beta-ribbon 42 95 - -
Vivi2g02024 275 ProSiteProfiles Zinc finger Dof-type profile. 58 112 IPR003851 GO:0003677|GO:0006355
Vivi2g02024 275 MobiDBLite consensus disorder prediction 41 55 - -
Vivi2g02024 275 PANTHER CYCLIC DOF FACTOR 2 139 272 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02024 Vivi-Chr2 94989511 94990671 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02024 10 272 C2C2-Dof Transcription Factor Family AT5G62430 37.134 1.77e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi2g02024 zf-Dof 2.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02024 - K16222 vvo:131646463 559.681