Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02022 ATGTCTCAGTTGATTAATGATTCAACAACCATAAAACTTTTTGGGACAACCATTTTTCTGACACACAACATCTATGTCTCTTCCAATGATTCTTCCTCAAAATTTGCTCATGAGGATTTCTCTGATCATAGTCTTCATTCATCTGTATCTTCATCTTCTACACTTGATGAAGTCTCCCAACAAACCATAGAGGATTTAAACACTCCCTCAGCTGAAACAGAAGCTTCGCATCAGTCTTCCACAAAACTTGATGAACAAAGTGATATGTCACAAGACAAATCTCCAAAGAAACCAGACATAATTGTTCCATGTCCAAGATGCAAAAGCATGGACACAAAGTTTTGCTACTACAACAACTACAACGTCAAACAGCCCAGACACTTTTGCAAAAACTGCCAGAGATACTGGACTTCCGGAGGAACCGCCAGAAAGATGCTTGTAGGAGCAGGTCGCCGTAAGAACAAAGCCACTTCTTCTTTTTCTTCCAATGTCTTGCATTATCCTCAAATGAATACTTTCTGGACATTTGGATCAAATTCTTCTCACATGTCATTATGGAATGTACAATCTATCCCAACACAATCTTGTGGCCCAAGTAAACCTGCATTAGGGAAACATTCAAGAGATGGAGACATGATCAACCATTCCAACTCAGATAAAGAAAAGCCTGGATTTGATGACCCTAATGATGTTGCAAGGAGTTCTATATGGTCAACAGTAGGAGTAAAGAATGGGAGAGGAATTTTCAAGGGATTTGGATCTAACTTTGATGACAAGAAGAACTATATAGTTGAAGCATCTTCATCAGTATTGAAAGCTAACCCAGCAGCTTTATCAAGGTATACTGTGTTACATGAGAGAATTTAA 867 0.3852 MSQLINDSTTIKLFGTTIFLTHNIYVSSNDSSSKFAHEDFSDHSLHSSVSSSSTLDEVSQQTIEDLNTPSAETEASHQSSTKLDEQSDMSQDKSPKKPDIIVPCPRCKSMDTKFCYYNNYNVKQPRHFCKNCQRYWTSGGTARKMLVGAGRRKNKATSSFSSNVLHYPQMNTFWTFGSNSSHMSLWNVQSIPTQSCGPSKPALGKHSRDGDMINHSNSDKEKPGFDDPNDVARSSIWSTVGVKNGRGIFKGFGSNFDDKKNYIVEASSSVLKANPAALSRYTVLHERI 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02022 288 MobiDBLite consensus disorder prediction 197 230 - -
Vivi2g02022 288 MobiDBLite consensus disorder prediction 46 102 - -
Vivi2g02022 288 Pfam Dof domain, zinc finger 101 156 IPR003851 GO:0003677|GO:0006355
Vivi2g02022 288 MobiDBLite consensus disorder prediction 78 95 - -
Vivi2g02022 288 ProSiteProfiles Zinc finger Dof-type profile. 102 156 IPR003851 GO:0003677|GO:0006355
Vivi2g02022 288 ProSitePatterns Zinc finger Dof-type signature. 104 140 IPR003851 GO:0003677|GO:0006355
Vivi2g02022 288 MobiDBLite consensus disorder prediction 46 77 - -
Vivi2g02022 288 PANTHER CYCLIC DOF FACTOR 2 165 287 IPR045174 GO:0003700|GO:0006355
Vivi2g02022 288 MobiDBLite consensus disorder prediction 204 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02022 Vivi-Chr2 94831338 94832317 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02022 203 288 C2C2-Dof Transcription Factor Family AT5G62430 44.792 5.25e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi2g02022 zf-Dof 4.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02022 - K16222 vvo:131646461 572.778