Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01061 ATGTCACCTGATGAAACACAACAAACCTCAAAGTCTGCAAAAGACATCAACCACCAACAAGGCTCTGGTGGTCGGAAAACATCTTCCTCAACATCTTCCTCAACAAAACCACAAGAACAAAACATGAAGTGTCCTAGATGTGACTCACCGAACACAAAATTCTGTTACTACAACAACTACAGCTTAACGCAACCGAGGCATTTCTGCAAAACATGTAGAAGATATTGGACAAAAGGTGGAGCTTTACGCAACGTTCCTATAGGTGGTGGATGTAGAAAAAACAAGAGAGTGAAATCATCATCAAGACTCTCTTGTGACTCCAAAGATTCTGCTACTTCTTCTTCGGAGTTTGTTGGTGGTTTGAAGTTTCTTCATTCTCTTTCTTCTCCTTCCATGGATTTTCACCTTGGTAATGGTTTACCTTTTCCTAGGCTTCAACTTCAGCACCACCCTCCATTATTTAACCATTTTCCTTCTTATGGAGAAACTTCTTCTGCCATGAATTACCCAGCTACTTCAAATTCTCTTGCTGCTATGAATTACCCTTTTTCAACAGGTAATAGTAATTATAACGGTGCAATTCAAGGTTTGAGTTCAATGAATATTAATCATGGTAACAGTAACATTGCTTCTTCTATTGAGTCACTGAGTTCTATGAACCAAGACTTGCACTGGAAGCTACAGCAACAGAGATTATCCATGCTGTTTGGTGGAGAAAACCAGAAAGATAACAATAATCAGACAGAGAAACCACTTCAACCTATTTTGTTTCAGAATCTCGAGGTTTCAAAACCATCTGGTGGGAATTTCTGTGTTGGAAATTCAAGAAGAGAAGGTTCAAATGGTGGAGCAGATACACCGACGGAGTGGTTTTTCGGTAATTCTTACGGTTCTGCAGCTGCTACACCTACTGCAAGTGGTGGAGCTGGTCATGATAATGGAAGCAACTGGAATGGTGGTGGTGTACATGCTTGGAATGATGTGCAGCAGCAATATAGTTCCATGCCCTAG 1011 0.4065 MSPDETQQTSKSAKDINHQQGSGGRKTSSSTSSSTKPQEQNMKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKRVKSSSRLSCDSKDSATSSSEFVGGLKFLHSLSSPSMDFHLGNGLPFPRLQLQHHPPLFNHFPSYGETSSAMNYPATSNSLAAMNYPFSTGNSNYNGAIQGLSSMNINHGNSNIASSIESLSSMNQDLHWKLQQQRLSMLFGGENQKDNNNQTEKPLQPILFQNLEVSKPSGGNFCVGNSRREGSNGGADTPTEWFFGNSYGSAAATPTASGGAGHDNGSNWNGGGVHAWNDVQQQYSSMP 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01061 336 MobiDBLite consensus disorder prediction 1 44 - -
Vivi2g01061 336 Pfam Dof domain, zinc finger 40 96 IPR003851 GO:0003677|GO:0006355
Vivi2g01061 336 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Vivi2g01061 336 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Vivi2g01061 336 MobiDBLite consensus disorder prediction 302 323 - -
Vivi2g01061 336 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 22 236 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01061 Vivi-Chr2 42677276 42679118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01061 22 336 C2C2-Dof Transcription Factor Family AT5G65590 43.827 8.19e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi2g01061 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01061 - - gmx:100780729 413.305