Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00635 ATGGTTCCACCAAATACCAACAACACACAAAATCATGAAAACCAACAACAACAAAAAGAGGATTCTTCTTCAGAATCCAAGAAACTAGATCAACAACCACAACAAAGAGTAGTTGTAAAATGTCCAAGATGTGACTCTCCCAACACTAAATTCTGTTACTACAACAACTACAGCCTCACTCAACCAAGACACTTCTGCAAAACCTGTAGAAGATATTGGACTAATGGTGGATCGTTGCGTAACGTTCCGATCGGCGGTGGTTGTCGAAAGAAACAGAAACTCAAAAACTCATCATCATCATCATTATCATCCATTTCTAAGTTCTCTTCTTCACCTTCACTTGATTTTCATCTTGGTGGCTTATTACCCTTACCTTTACCATTACCCTTTACTTCAAAACCCTATTTCTATAACACTTGTGTTCCTACTACAAGTCCTTCAACTTTTCATCTTGATCCATCTAGTACCTCAAATCCAATGATGGCTCTAAACTTATATCCTTTTTCTTCTACTTCAAATGGAAATGGATTCATCAATGAAAATTCAATTCAAGGAATGAACTTCATGAATGTGAATACTACTACAACAACAACAACTACTAGTAGTAGTAATACTAATCTTGCTATTGAATCATTGAGTTGTATGAACCAGGATTTGCATTTGAAGCTTCAGCAACAACGATTAGCAACTATGTTTGGTGGAGATGATGATGACAAGAAAGATGGTATTACTATTAGTGGCAATGATTTGGTTTCTCAGGTTAGCGGCATCGAAAAGGCTCAACCGATTTTGTTTCAGAATCTCGAGAATTCAAAGGCGGAGATGTTTCAAGGTGTTGGTGATGATGGTGGTGATATGAGGAAAGCAGGTCCAAGTCCAAGTGAATGGTTCTTTGAGATGAATTCGTATTCTTCGGTGATGACTCCGACGAGAAATAATGATGGTGTTTGCATGAATGGCGATCATGATAATGGAGGAAACAACATCAACAACAACTGGATTAACAATGGTGGTGTTCATGCTTGGAGTGATGTGCAGCAGCAGCAGCTACCATATAGTGCTTTGCCCTAA 1071 0.3828 MVPPNTNNTQNHENQQQQKEDSSSESKKLDQQPQQRVVVKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGSLRNVPIGGGCRKKQKLKNSSSSSLSSISKFSSSPSLDFHLGGLLPLPLPLPFTSKPYFYNTCVPTTSPSTFHLDPSSTSNPMMALNLYPFSSTSNGNGFINENSIQGMNFMNVNTTTTTTTTSSSNTNLAIESLSCMNQDLHLKLQQQRLATMFGGDDDDKKDGITISGNDLVSQVSGIEKAQPILFQNLENSKAEMFQGVGDDGGDMRKAGPSPSEWFFEMNSYSSVMTPTRNNDGVCMNGDHDNGGNNINNNWINNGGVHAWSDVQQQQLPYSALP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00635 356 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Vivi2g00635 356 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Vivi2g00635 356 MobiDBLite consensus disorder prediction 1 17 - -
Vivi2g00635 356 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 227 IPR045174 GO:0003700|GO:0006355
Vivi2g00635 356 MobiDBLite consensus disorder prediction 1 34 - -
Vivi2g00635 356 Coils Coil 12 32 - -
Vivi2g00635 356 Pfam Dof domain, zinc finger 38 93 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00635 Vivi-Chr2 17263120 17264685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g00635 16 356 C2C2-Dof Transcription Factor Family AT5G65590 37.912 3.08e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi2g00635 zf-Dof 9.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00635 - - tpra:123923236 338.961