Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08206 ATGGGTTTGAGTTCTAAGCAAGTTTCTAGTAGAGGTGTTGATTGGAACCAAACCTTGTTACAAGATCAAACCTTAGAACTACCAAAAGCTTCACCTATGAGAAAACAACAACATCAACAACAACAACAAAATCATCAACTAGAAGCTGTGAATTGTCCAAGATGTGATTCTACAAACACCAAGTTTTGTTACTACAACAATTACAACAAGTCTCAACCTCGTCATTTCTGTAGAGCTTGTAAGAGACATTGGACTAAAGGTGGAACTCTAAGAAATGTTCCTGTTGGTGGTGTTAGAAAGAACAAAAGAGTAAAAAAATCAACTACTATTAGCACCTCCTCAAAAACTACTATTAGCACCTCCTCAAAAACTACTATTACCACCCCCACCCCCACCACCTCAAATGCCACAACCACACCTTCTATGTATGAACCTCTCATTCATCCACCATCTTTTTTTCCATCTCAGAATCTGATGAGTACTAGAGATTCATCACAAGGTAACAATGAAGAGTTTGGTATTGGTAATGGTATCTTTCTGAGTTCATCTATGGATTTACCTCAAAACCAAAGCCTTATATTCCCATTCTCAAACTCAAGCTCTTTGAGATCATCCAATGCATATAACTATGGAGAAGAGATAAAAGTCATGGAAGATTCATCTCTTAACAACACTGTAATGCCAAGTACTAGTGGTGCTATTACACAGCCATGGGAGAATATTCCCGCAACAGGAAATAGTGGCATGGAAATGTCAAACTATTGGAGTTGGGAGGATATTGATTCTTTGGTCTCAACTGATCTTAATGTTCCTTGGGATGATTCTGATATCAAACCCTAA 840 0.3786 MGLSSKQVSSRGVDWNQTLLQDQTLELPKASPMRKQQHQQQQQNHQLEAVNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGVRKNKRVKKSTTISTSSKTTISTSSKTTITTPTPTTSNATTTPSMYEPLIHPPSFFPSQNLMSTRDSSQGNNEEFGIGNGIFLSSSMDLPQNQSLIFPFSNSSSLRSSNAYNYGEEIKVMEDSSLNNTVMPSTSGAITQPWENIPATGNSGMEMSNYWSWEDIDSLVSTDLNVPWDDSDIKP 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08206 279 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Vivi1g08206 279 Pfam Dof domain, zinc finger 49 102 IPR003851 GO:0003677|GO:0006355
Vivi1g08206 279 MobiDBLite consensus disorder prediction 106 140 - -
Vivi1g08206 279 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
Vivi1g08206 279 MobiDBLite consensus disorder prediction 107 140 - -
Vivi1g08206 279 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 203 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08206 Vivi-Chr1 233748069 233749405 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08206 46 118 C2C2-Dof Transcription Factor Family AT5G66940 63.014 6.80e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi1g08206 zf-Dof 2.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08206 - - gmx:100806358 305.449