Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08195 ATGGGTTTGAGTTCTAAACAAGTTTCTAGTAGAGATGTTGATTGGAACCAAACCTTGTTACAAGATCAAACCTTAGAACTACCAAAAGCTTCACCTATGAGAAAACAACAACATCAACAACAACAAAATCATCAACATCAACTAGAAGTTGTGAATTGTCCAAGATGTGATTCTACAAACACCAAATTTTGTTACTACAACAATTACAACAAGTCTCAACCTCGTCATTTCTGTAGAGCTTGTAAGAGACATTGGACTAAAGGTGGAACTCTAAGAAATGTTCCTGTTGGTGGTGTTAGAAAGAACAAAAGAGTAAAAAAATCAACTACTATTAGCACCTCCTCAAAAACTACTATTAGCACCTCCTCAAAAACTACTATTACCACCCCCACCACCACCACCTCCACCTCCGATACCAAAACCACACCTTCTATGTATGAACCTCTCATTCATCCACCATCTTTTTTTCCATCTCAGAATCTGATGAATACTAGAGATTCATCACAAGGTAATAATGAAGAGTTTGGTATTGGTAATGGTATCTTTCTAAGTTCATCTATGGATTTACCTCAAAACCAAAGCCTCATATTCCCATTCTCAAACTCAAGCTCTTTGAGATCATCCAATGCATATAACTATGGTGAAGAGATAAAAGCCATGGAAGATTCATCTCTTAACAACACTGTAATGCCAAGTACTAGTGGAGCTGATGCCGGTGCTGGTGCTATTACACAGCCATGGGAGAATATTCCAGCAACAGGAAATAGTGGCATGGAAATGTCAAACTATTGGAGTTGGGAGGATATTGATTCTTTGGTCTCTACTGATCTTAATGTTCCTTGGGATGACTCTGATATCAAACCCTAA 867 0.3795 MGLSSKQVSSRDVDWNQTLLQDQTLELPKASPMRKQQHQQQQNHQHQLEVVNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGVRKNKRVKKSTTISTSSKTTISTSSKTTITTPTTTTSTSDTKTTPSMYEPLIHPPSFFPSQNLMNTRDSSQGNNEEFGIGNGIFLSSSMDLPQNQSLIFPFSNSSSLRSSNAYNYGEEIKAMEDSSLNNTVMPSTSGADAGAGAITQPWENIPATGNSGMEMSNYWSWEDIDSLVSTDLNVPWDDSDIKP 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08195 288 Pfam Dof domain, zinc finger 50 103 IPR003851 GO:0003677|GO:0006355
Vivi1g08195 288 ProSitePatterns Zinc finger Dof-type signature. 53 89 IPR003851 GO:0003677|GO:0006355
Vivi1g08195 288 ProSiteProfiles Zinc finger Dof-type profile. 51 105 IPR003851 GO:0003677|GO:0006355
Vivi1g08195 288 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 35 208 IPR045174 GO:0003700|GO:0006355
Vivi1g08195 288 MobiDBLite consensus disorder prediction 122 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08195 Vivi-Chr1 233243002 233244705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08195 47 119 C2C2-Dof Transcription Factor Family AT5G66940 63.014 8.76e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi1g08195 zf-Dof 2.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08195 - - gmx:100806358 295.434