Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06214 ATGAGAGCTAATAAGAGTTTGATAAGTAAGAGGAAGGTTAGCATTAGAAGGAAACTGAGGAAGATGATGAAATGTGTGTGTTCAAGAGATAGGTTAAGTGTTGATGAAATGAATTATTCATCAGAGTCTCTTGCAACTAGGGACTATTCAGCAACTGCTAGTGGTTATTCGTCTCGACCGGGCGAAAATGAAACTAAGGTGGATAATAGTAACATTGAAGAAGCTGAATCGTCTCTTCGCGAAAGTGGTTACTTGAACTATGAGGAAGCTAGAGCTTTGTTAGGACGACTTGAGTATCAGAAAGGAAACATTGAAGCTGCACTTCATGTGTTTGAAGGAATAGATATTGCTGCTGTTATTCCTAAAATGAAAATGTCGATATCTAGAAGATGTGAATCGGATAATAAACGTCGTCCGGAAAATGATTATGCGCCTTCTATGTCAATACATGCTGTTAGTTTACTTCTTGAAGCTGTTTTTCTCAAGGCTAAATCATTAAAGACTCTTGGAAGGTTTCAAGAAGCTGCACAATCATGCAAAACAATTTTAGACACTATAGAATCAGCATTACCAGAAAGCTGGCCTGAAAACTTTGTTTCAGATTGTAAATTACAAGAGACGGTAGCAAAGGCGGTTGAATTGCTTCCGGAGCTATGGAGCCTTGCAGGTTCACCTCAAGATGTTGTCTTATCATTTAGGAAAGCCTTGCTTTATCATTGGAATCTTGACGATGAAGCAACTGCGAGAATACAAAAGGAATTTGCTTTGTTTCTTTTATACAGCGGTTACGAAGCGGACTCTCCTCCGCTTCGGTCTCAGTTAGACGGTTCCTTTGTGCCGAGAAACAACATAGAAGAAGCGGTTCTTCTGCTTCGGATTCTGCTGAGAAAATCAAAAGATCCTTCGTTAATCCATCACCTTTCTTTCGCTCTAAGTGCTTGTGGCGAATTCATGACACTAGCACAACAGGTTGAGGAGTTACTTCCAGAAACCATGGAGAGAAGAGGAAGATATTATACTCTATCTCTTTGTTACTGCGGCGAAGGCGAGAATATGGTTGCTTTGGATCTTTTGAGGAACTTTTTGAATAATAAAGAAAACTCGGTAAACTCAGATTGCATAGAGGAATTGCTTTTAGCTTCGAAAATTTGTGCAGACAACAAGGTTTGTGTCGAAGACGGAATCACATTTTCGAGCAAAGCCATTTCTCAGATGAATGGAAAATGCAATCAAATGGAAGCTATTGCGAATTGTTTACTAGGTGTTCTACTGTCAGCAAAATCCAAGTCAGTTTCTTCTGAATCAGAGAAAGTTTTGATACAATCTCAAGCATTCAGTGCTCTAAAAGCTTCTGAAAAAATGATGGAGGATAGTGATCCTAATCCTTACATTGTTCATCATCTTTGTCTAGAATATGCTGAACATAGGAAGCTGAGAATCGCTTACGATCATGCAAAGAATTTGATTAAGCTTGAAGGTGGAACTAGCATTAATGGATATATACTACTAGCAAGGATTTTATCAGCTCAAAAAAAGTTCTCCGATGCCGAGATTGTTATCGATGCTGCGTTAGAACAAAGTGGAAAATGGGAACAAGGAGAATTGTTGAGGACTAAAGCTAAGATTCAGATTGCACAAGGAAGATTGAAAAATGCTATTGAGACATACACTTTTCTTCTCGCTGTTCTTCAAGTCCAGAACAAAAATCTCGGAACTGCAAACAAGGCTATGAAGTGTAAGCGAAATCGCGACAGAAGACTAGAAATGGAAGTGTGGCATGATTTAACCAATGTATATACAACTTTATCGCAATGGCGTGATGCCGAAGTTTGTTTAGCCAAATCTGAAGCTATTGATCCATATTCTGCTTCTAGATGGCACTCTACAGGTATGCTTTATGAAGCAAGAGGTCTACATCAAGAAGCATTAAAATCATTTAAAAAAGGATTGGATATTGATCCCAACCATGTTCCAAGTTTGATATCAACAGCCTGTGTTCTGAGAAAACTTGGGTGTCAATCATCATCTTCAATTGTTAAAAGCCTTCTCATTGAGGCATTGAGGCTTGACAGAACAAACTCATCTGCATGGTACAATCTTGGACTTGTCTACAAAGATGATTCGGGAACATCAGCATTGGAAGCTGCTGAATGCCTTGAGGCAGCGGTTTTTCTTGAAGAATCTTGTCCCATTGAACCCTTTAGATAA 2208 0.3895 MRANKSLISKRKVSIRRKLRKMMKCVCSRDRLSVDEMNYSSESLATRDYSATASGYSSRPGENETKVDNSNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVIPKMKMSISRRCESDNKRRPENDYAPSMSIHAVSLLLEAVFLKAKSLKTLGRFQEAAQSCKTILDTIESALPESWPENFVSDCKLQETVAKAVELLPELWSLAGSPQDVVLSFRKALLYHWNLDDEATARIQKEFALFLLYSGYEADSPPLRSQLDGSFVPRNNIEEAVLLLRILLRKSKDPSLIHHLSFALSACGEFMTLAQQVEELLPETMERRGRYYTLSLCYCGEGENMVALDLLRNFLNNKENSVNSDCIEELLLASKICADNKVCVEDGITFSSKAISQMNGKCNQMEAIANCLLGVLLSAKSKSVSSESEKVLIQSQAFSALKASEKMMEDSDPNPYIVHHLCLEYAEHRKLRIAYDHAKNLIKLEGGTSINGYILLARILSAQKKFSDAEIVIDAALEQSGKWEQGELLRTKAKIQIAQGRLKNAIETYTFLLAVLQVQNKNLGTANKAMKCKRNRDRRLEMEVWHDLTNVYTTLSQWRDAEVCLAKSEAIDPYSASRWHSTGMLYEARGLHQEALKSFKKGLDIDPNHVPSLISTACVLRKLGCQSSSSIVKSLLIEALRLDRTNSSAWYNLGLVYKDDSGTSALEAAECLEAAVFLEESCPIEPFR 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06214 735 Gene3D Tetratricopeptide repeat domain 433 731 IPR011990 GO:0005515
Vivi1g06214 735 MobiDBLite consensus disorder prediction 50 73 - -
Vivi1g06214 735 SUPERFAMILY TPR-like 534 705 IPR011990 GO:0005515
Vivi1g06214 735 Gene3D Tetratricopeptide repeat domain 64 420 IPR011990 GO:0005515
Vivi1g06214 735 Pfam Tetratricopeptide repeat 625 656 IPR019734 GO:0005515
Vivi1g06214 735 SMART tpr_5 589 622 IPR019734 GO:0005515
Vivi1g06214 735 SMART tpr_5 497 530 IPR019734 GO:0005515
Vivi1g06214 735 SMART tpr_5 694 729 IPR019734 GO:0005515
Vivi1g06214 735 SMART tpr_5 623 656 IPR019734 GO:0005515
Vivi1g06214 735 SMART tpr_5 156 189 IPR019734 GO:0005515
Vivi1g06214 735 SMART tpr_5 533 566 IPR019734 GO:0005515
Vivi1g06214 735 MobiDBLite consensus disorder prediction 50 65 - -
Vivi1g06214 735 ProSiteProfiles TPR repeat profile. 623 656 IPR019734 GO:0005515
Vivi1g06214 735 SUPERFAMILY TPR-like 157 556 IPR011990 GO:0005515
Vivi1g06214 735 PANTHER PROTEIN NPG1 23 735 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06214 Vivi-Chr1 138645420 138648724 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06214 15 735 Calmodulin-binding Proteins AT4G28600 51.286 0.0 708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06214 1 138645420 138648724 Vivi1g06214 1 138645420 138648724 ECH