Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04872 ATGTCTTCCACCCTCACAATGCAACGTTTCAAAATGGGTTTCTCTGATTACATCCAAGCATTAGAACAGGAACGTCGTAAGATTCAGGTCTTTCCCAAAGAACTTCCCCTTTCCCTAGAACTCGTTACACAAGCTATTGAAACTTGTAGACAGCAATTGTCTGGAACAACAACTGAGTATAATTTGAATGGACAATCTGAGTGTTCTGAACAGACAACATCAACAGGACCTGTTTTGGAAGAGTTTATTCCGATTAAGAAAAGGGCTTCTCCTTATTGTGAACAAGTCTATGATGATGATGATGGTGATGAAGAAGATGAGCAACATTCTCATCATAAGCAGCAAAAAATTTCAATGGATGATGATAATAAGAATTCTGATAAGAAGAAATCTGATTGGCTTAGATCTGTTCAGTTATGGAATTCAGATCCTCCATCTGAGGAGGATGCTACTAGGAAAGTGTCTGTGGTAGAATTGAAGAGAAATGGAAGTGCTGGTGGTGCTTTTCACCCGTTCCAGAAAGACGAAAGAGTTAACAACAAGACATGTGAGTTTTTGAGTAAAGGACAACCCTCTTCGACCGGTGTAGCTGCTGCCAGTTCTAACGCGGCCACGACTGTCACTAGTAACAATGCTGGAAACAACAAAAGAGAGGATAAAGAGGAAAAGAGAAAGCAGCGAAGATGCTGGTCGCAGGAGTTGCACAAACGATTCTTGCAAGCACTTCAACAACTCGGAGGTGCAGATTCTGCCACGCCGAAGCAAATCAGAGAGCTAATGAACGTTGACGGCCTCACAAACGATGAAGTCAAAAGCCATTTACAGAAATACCGTTTGCATACAAGAAGACCGAGTTCATCGAATAACGAAAGTGCCAAATCACAAACAGCAACACCTTTTGTCCTTGTAGGAAACATTTTTGTCCAACCAACAGAATACGGCGGGGTAGGTTCATCAACAACATCAGGGGAAATGACAAAGGTGGTTGCACCTTCTGGAATTTACGCACCAGTGGCCTCACATCCCCCGCTTGCTACAATTAAGAAGCCCGAGTTTAAGAAGTTCGAGAAATCAATCTCAGAAGAAAGGGGTAATAATAATAATAATAACAACAACAGTGAAGGCGCTGTTCATTCAAATTCACCTGCTTCATCATCCTCTACACATACTACTACTAATACTTCCCATGGCTTTTGA 1197 0.4177 MSSTLTMQRFKMGFSDYIQALEQERRKIQVFPKELPLSLELVTQAIETCRQQLSGTTTEYNLNGQSECSEQTTSTGPVLEEFIPIKKRASPYCEQVYDDDDGDEEDEQHSHHKQQKISMDDDNKNSDKKKSDWLRSVQLWNSDPPSEEDATRKVSVVELKRNGSAGGAFHPFQKDERVNNKTCEFLSKGQPSSTGVAAASSNAATTVTSNNAGNNKREDKEEKRKQRRCWSQELHKRFLQALQQLGGADSATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSSSNNESAKSQTATPFVLVGNIFVQPTEYGGVGSSTTSGEMTKVVAPSGIYAPVASHPPLATIKKPEFKKFEKSISEERGNNNNNNNNSEGAVHSNSPASSSSTHTTTNTSHGF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04872 398 MobiDBLite consensus disorder prediction 106 130 - -
Vivi1g04872 398 MobiDBLite consensus disorder prediction 188 213 - -
Vivi1g04872 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 222 282 IPR017930 -
Vivi1g04872 398 MobiDBLite consensus disorder prediction 95 130 - -
Vivi1g04872 398 NCBIfam myb-like DNA-binding domain, SHAQKYF class 225 280 IPR006447 GO:0003677
Vivi1g04872 398 MobiDBLite consensus disorder prediction 357 398 - -
Vivi1g04872 398 MobiDBLite consensus disorder prediction 214 229 - -
Vivi1g04872 398 MobiDBLite consensus disorder prediction 188 229 - -
Vivi1g04872 398 Gene3D - 224 282 - -
Vivi1g04872 398 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 14 365 IPR044787 GO:0003700|GO:0006355
Vivi1g04872 398 MobiDBLite consensus disorder prediction 362 398 - -
Vivi1g04872 398 FunFam Myb family transcription factor 224 282 - -
Vivi1g04872 398 Pfam Myb-like DNA-binding domain 227 278 IPR001005 -
Vivi1g04872 398 SUPERFAMILY Homeodomain-like 223 283 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04872 Vivi-Chr1 105874740 105877246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04872 16 385 G2-like Transcription Factor Family AT1G68670 44.162 1.48e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi1g04872 Myb_DNA-binding 2.7e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04872 1 105874740 105877246 Vivi1g04872 1 105874740 105877246 ECH