Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04871 ATGCAAACTCATCACCATGCCTCCTGCACCAGTTTAGAAGATGAAGATTCAATTTTCCTCTCTCTCGCTCCTCCTGGCCACCAACATTTACCACCATCTTCCAAACTCTCAGCATCCCCTCATATCCCTCCACTGCAACTAAACACTCCTACTTCCACTACCACTCCACCTCAGTATTGGATCCCTTCTCCTGCTCAAATCCTTATTGGTCCAACCCAGTTTTCTTGCACTGTCTGCAACAAAACCTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGCCATGGATCACAATATAGGACAGGACCTGAATCCCTTAGAGGGCCAAAACCAGCTTCAACTTCATCAATACTGAGACTTCCCTGCTATTGTTGCGCCGAGGGTTGCAAGAACAACATAAACTATCCAAGGTCAAGACCACTGAAAGATTTCAGGACACTTCAAACACACTACAAGAGAAAGCACGGAGGGAAATCGTTCGAGTGCAGGAAGTGTAGGAAGACGTTTGCTGTGAGAGGAGATTGGAGAACACATGAGAAGAATTGTGGGAAGCTTTGGTTTTGTATATGTGGTTCTGATTTCAAACACAAAAGATCTCTTAAGGATCATGTTCGTACTTTCGGCAGCGGACACGCTCCACACACATTGGAATCTTTTAGTTTTGATGAACATAAAAAAGCAAGTGAGAATTACAAGGAAGAAGAAGAGGAAGAAAATGGAAGTGAAGATGAAGAAGACAATGACAATGACAGTGAAGTTGCTTTTACTTTTAACTAA 780 0.4321 MQTHHHASCTSLEDEDSIFLSLAPPGHQHLPPSSKLSASPHIPPLQLNTPTSTTTPPQYWIPSPAQILIGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRTGPESLRGPKPASTSSILRLPCYCCAEGCKNNINYPRSRPLKDFRTLQTHYKRKHGGKSFECRKCRKTFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRTFGSGHAPHTLESFSFDEHKKASENYKEEEEEENGSEDEEDNDNDSEVAFTFN 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04871 259 MobiDBLite consensus disorder prediction 32 55 - -
Vivi1g04871 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 101 IPR013087 -
Vivi1g04871 259 Pfam Zinc finger, C2H2 type 74 93 IPR013087 -
Vivi1g04871 259 MobiDBLite consensus disorder prediction 235 252 - -
Vivi1g04871 259 MobiDBLite consensus disorder prediction 219 234 - -
Vivi1g04871 259 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Vivi1g04871 259 SMART c2h2final6 74 96 IPR013087 -
Vivi1g04871 259 SMART c2h2final6 124 156 IPR013087 -
Vivi1g04871 259 SMART c2h2final6 161 181 IPR013087 -
Vivi1g04871 259 PANTHER ZINC FINGER PROTEIN WIP2 53 237 IPR043584 GO:0003700|GO:0010468
Vivi1g04871 259 Gene3D Classic Zinc Finger 73 96 - -
Vivi1g04871 259 MobiDBLite consensus disorder prediction 219 259 - -
Vivi1g04871 259 MobiDBLite consensus disorder prediction 22 55 - -
Vivi1g04871 259 FunFam Zinc finger protein WIP2 130 212 - -
Vivi1g04871 259 Coils Coil 225 245 - -
Vivi1g04871 259 SUPERFAMILY beta-beta-alpha zinc fingers 74 181 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04871 Vivi-Chr1 105777776 105778702 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04871 14 217 C2H2 Transcription Factor Family AT1G13290 68.376 3.28e-109 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g04871 zf-C2H2_6 0.00059 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04871 1 105777776 105778702 Vivi1g04871 1 105777776 105778702 ECH