Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04870 ATGGAGTTAGGAGGAGGTACTTGCACAGATGAAACCACCACCACCACCACCACCACAAGCAATGACTCTCTTTCGATATCTCTTTTACCGGCGAAACAATCTCCACCGCCGCCGACGAACACACTCAGTCGCGTTGGAAGCGGTGCTAGCGCCGTTACCGATCCTGAAAACTGTGTCGGCTCCGGCGAAGCCGAATCTCGTAAACTCCCGTCGTCGAAATACAAAGGCGTGGTTCCACAGCCGAATGGACGTTGGGGAGCTCAGATTTACGAGAAACATCAGCGAGTCTGGCTTGGTACGTTCAATGAAGAAGACGAAGCCGCCAGAGCGTACGACATCGCCGCCTTGAGATTCCGTGGAAAAGACGCTGTCACGAACTGTAAGAGCCTCGGCGGCGTAGAAAACGACACCGACGAAGGTGAAGCCGAGTTTCTCAACTCGCATTCCAAATCCGAGATCGTCGACATGCTTCGGAAACATACGTACGACGACGAGCTTAAGCAGAGCATGCGCGAGTCCTGTGGCGGAAGGCAGCGGCGCAACGGAGAATCTGCTACAGCGTCACGTGGCGCGTGCGATGCTAAGGCGCGTGAGCAGTTGTTTGAGAAAACCGTTACGCCAAGTGACGTTGGAAAGTTGAATCGGTTGGTGATACCGAAACAGCACGCGGAGAAGCACTTTCCGTTAAATGCTGTTGCCGTAACTGTCTCCGGCGATGGCATCTCGCCGTCGGTGGCGGCGGCGAAGGGTTTGCTATTGAATTTCGAAGACGTTGGAGGGAAAGTGTGGCGATTTCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTAACCAAAGGCTGGAGCCGGTTCGTTAAGGAGAAGAATCTCAAAGCCGGTGATGCGGTTCGGTTCTTCCGGTCGACCGGACCGGATAGACAGCTCTACATTGACTGCAAAGCCAGGAGCATTAGTGTTGTCGGCGTCAGTATTGGTGAAACCAATAATAATAATAATACTGGTGGTTTGTTTATTCCGGTCCGACCGGTAGTTGAACCGGTTCAAATGGTTCGGCTTTTTGGGGTAAATATTTTGAAAATACCTGGTTCAGGTTCTGATGGTGTTGTTGGCGTTAGCTGCAATGGGAAGAGGAAAGAGATGGAATTATTTTCCTTAGAATGCAGCAAAAAGCAAAAGATAATTGGAGCTTTATGA 1197 0.5088 MELGGGTCTDETTTTTTTTSNDSLSISLLPAKQSPPPPTNTLSRVGSGASAVTDPENCVGSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAALRFRGKDAVTNCKSLGGVENDTDEGEAEFLNSHSKSEIVDMLRKHTYDDELKQSMRESCGGRQRRNGESATASRGACDAKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLNAVAVTVSGDGISPSVAAAKGLLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDAVRFFRSTGPDRQLYIDCKARSISVVGVSIGETNNNNNTGGLFIPVRPVVEPVQMVRLFGVNILKIPGSGSDGVVGVSCNGKRKEMELFSLECSKKQKIIGAL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04870 398 CDD AP2 72 126 IPR001471 GO:0003700|GO:0006355
Vivi1g04870 398 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 68 374 IPR044800 GO:0003700
Vivi1g04870 398 MobiDBLite consensus disorder prediction 170 191 - -
Vivi1g04870 398 Pfam AP2 domain 72 120 IPR001471 GO:0003700|GO:0006355
Vivi1g04870 398 Gene3D - 190 323 IPR015300 -
Vivi1g04870 398 ProSiteProfiles B3 DNA-binding domain profile. 201 317 IPR003340 GO:0003677
Vivi1g04870 398 SUPERFAMILY DNA-binding pseudobarrel domain 199 313 IPR015300 -
Vivi1g04870 398 SMART B3_2 201 316 IPR003340 GO:0003677
Vivi1g04870 398 Gene3D AP2/ERF domain 72 129 IPR036955 GO:0003700|GO:0006355
Vivi1g04870 398 FunFam AP2 domain-containing protein RAP2.8 72 129 - -
Vivi1g04870 398 MobiDBLite consensus disorder prediction 1 75 - -
Vivi1g04870 398 Pfam B3 DNA binding domain 201 307 IPR003340 GO:0003677
Vivi1g04870 398 ProSiteProfiles AP2/ERF domain profile. 73 128 IPR001471 GO:0003700|GO:0006355
Vivi1g04870 398 SUPERFAMILY DNA-binding domain 72 126 IPR016177 GO:0003677
Vivi1g04870 398 CDD B3_DNA 200 302 IPR003340 GO:0003677
Vivi1g04870 398 SMART rav1_2 73 134 IPR001471 GO:0003700|GO:0006355
Vivi1g04870 398 MobiDBLite consensus disorder prediction 7 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04870 Vivi-Chr1 105733625 105735246 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04870 7 398 B3 DNA Binding Superfamily AT1G25560 58.272 9.43e-143 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Vivi1g04870 B3 9.1e-26 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04870 1 105733625 105735246 Vivi1g04870 1 105733625 105735246 ECH