Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04859 ATGATACAAGAAGATCAAGGCCAGTGTTCATCTCAAACAATGAACAACTTCGAAACCTATCAACAAGAACAGTTTCTTCTTCACCAACAACAACTCATGAGGCAACAAAACAGCTTCTCTTTCCCAGCTGATCATCAACCAATCTTGCAGCAACCATGGTCATCCATGTCTATGCAACAATTCCATGTCCATGACCCTTTTGTTATCCCTCAACAACAAACCTCATCATCACCCTATGCAAGTTTGTTCAACAGATCTTCTAGGGTTCCGTCTCTTCAGTTTGCATACGATCATCATCATCATGGAGGGTCTGAACAGCATCTTAGGATCATATCTGATACACTTCACCAACATGGATCTTTTGGTGGACTTCAATATCAAGGTGGTGATGTTGGAAAGATGAGTGCTCAAGAAATCATGGAGGCTAAAGCTCTTGCTGCTTCAAAAAGTCATAGTGAAGCTGAGAGAAGACGCAGAGAGAGAATCAATAATCATCTTGCTAAGCTTCGTAGCTTGTTGCCAAGCACAACCAAAACGGATAAAGCATCATTGCTAGCAGAAGTGATACAGCATGTGAAAGAGTTGAAGCGTCAAACATCATTAATATCAGAAACATGTCAAGTTCCAACGGAATGTGATGAGTTAACAGTGGATGCTGCAAATGATGAAGATGATGAAGAATATGGAAATGGAAACAAGTTTATTCTCAAAGCCTCACTTTGCTGTGATGATAGGTCAGATCTTTTACCGGAACTAATCAAGACACTGAAAGCATTAAGGTTAAGGACAGTGAAAGCTGATATAACAACACTTGGAGGACGTGTTAAGAATGTTTTGTTCATCACTGGTGAAGATCATGATCATGAATATTGCATTAGTTCAATACAAGAAGCACTTAAAGGTGTGATGGAGAAGAGTGTTGGAGATGAATCAGCTTCTGGAAGTGTTAAGAGACAAAGGACTAATATAATATCTATATCTAATTAG 987 0.3921 MIQEDQGQCSSQTMNNFETYQQEQFLLHQQQLMRQQNSFSFPADHQPILQQPWSSMSMQQFHVHDPFVIPQQQTSSSPYASLFNRSSRVPSLQFAYDHHHHGGSEQHLRIISDTLHQHGSFGGLQYQGGDVGKMSAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLISETCQVPTECDELTVDAANDEDDEEYGNGNKFILKASLCCDDRSDLLPELIKTLKALRLRTVKADITTLGGRVKNVLFITGEDHDHEYCISSIQEALKGVMEKSVGDESASGSVKRQRTNIISISN 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04859 328 CDD bHLH_AtAIG1_like 141 219 - -
Vivi1g04859 328 SMART finulus 152 201 IPR011598 GO:0046983
Vivi1g04859 328 Pfam Helix-loop-helix DNA-binding domain 149 195 IPR011598 GO:0046983
Vivi1g04859 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Vivi1g04859 328 PANTHER TRANSCRIPTION FACTOR BHLH30 74 323 IPR045847 GO:0003700|GO:0006355
Vivi1g04859 328 Gene3D - 141 202 IPR036638 GO:0046983
Vivi1g04859 328 FunFam transcription factor bHLH30 141 204 - -
Vivi1g04859 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 206 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04859 Vivi-Chr1 105139009 105141611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04859 79 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 62.500 9.25e-91 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g04859 HLH 1.5e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04859 1 105139009 105141611 Vivi1g04859 1 105139009 105141611 ECH