Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04851 ATGGCTTCCGATACCGCTTCTCGTTCGAGTTCCGCGGCCGATTCCTACATTGGTTGCTTGATAAGTCTTACGTCCAAGAGTGAGATCAGATACGAGGGCGTTCTCTACAACATCAACACAGATGAATCCAGTATTGGGTTGAAAAATGTGCGCTCTTTTGGAACTGAAGGAAGGAAAAAGGACGGTCCACAAATTCTGCCAGGTGACAAGGTCTATGAGTATATACTCTTCCGTGGGACGGACATTAAGGATTTACAGGTGAAATCTTCTCCACCTGTCCAGCCTACTGCACCAACAAATACCGACCCAGCTATTATTCAGTCTCAGTATCCCCGCTTAGCCACACCATCTACTAGTTTACCAGCTGCAAGTGGATCTTTGACTGATGCTAGTCCTCATACAACACAGCTCGGACACCCAGGGTCAAATTTTCAAGGGCCTTTGTATCAACCTGGAGGAAACGTAGTATCATGGGGAGCTTCTTCGCCTTCTCCAAATGCAAATGGTGGTGGGCTTGCTATGCCAATGTATTGGCAAGGATATTATGGTGCCCCAAATGGGCTTCCTCAGTTACATCAGCAATCCTTGCTACGACCTCCTCCTGGCTTATCCATGCCTTCATCTATGCAGCAGCCTATGCCTTCATCTATGCAGCAGCCAATGCCTTCCTCTTTGCAGCAGCCCATGCCTTCATCTTTGCAGCAGCACATGCCTTCATCTTTGCAGCAGCACATGCCTTCATCTATGCAGCAGCCATTGCAGTATCCCAATTTTAGCCCTTCTTTGCCAACTGGGCCTTCAAACTTTCCTGAATTCCCTTCAGCTTTCCTCCCTGTGGGTACTAGTTCCCCTAATATAACATCTACTTCTGCACCTCCATTAAATCTTCCAACAACAATTTCACCTCCAGCACCTTTGGCCACACTAGCTCCTGAAACTTTTCAAGTATCAGTACCAAACAAGACACCAACTGTGTCCCTTCCTGCAGTCACACTAGGTGCTAGCTTGTCATCACTAGCTTCTTTTACCAATGGTGGTCCTGATGTGAGTGCTGCTGTACCAACGGCTAATAAACCTACTGCAATTTCAGCTCCAAGTTTTTCATACCAAACTGTACCCCAGCAGATGGCTCCTTCAATTGTTGGCTCTTCGAATTCTAGCCGCACAGAACCACCTGTCCCTTCTCTGGTAACCCCAGCTCAATTATTGCAGTCTGGGCAATCTGTAGTAGCTTCATCTAAGCCTTCACAAACACCACATAAGGATGTTGAAGTGGTTCCGGTATCATCAACTTCACCTCCAGAGCCATCTGTTTCTGTTGCTGCTGAATCCCAGCCACCGATACTTCCGTTGCCAGTGACTTCACGGCCAGCTCACAGGCCCGGTGGAGCTTCTAGCCAAACTCCTCACAGCTATGGTTATAGGGGACGTGGAAGAGGAAGAGGAATCCAGGGTTTCCGCCCAGCTGAAAGATTCACTGAGGACTTTGACTTCACGGCAATGAATGAGAAGTTCAAAAAGGATGAAGTATGGGGTCACCTAGGTAAAAGTAACAAGAAAGATGGGGAAGAAAATGCTAGTGATGAAGATGGCGGTCAATATGAAGACGATGGCGATGTATCAAACTTGGAGGTTAAGCCTGTTTATAACAAGGATGATTTCTTTGACTCACTCTCCTGCAACTCACTCAATAATGATCCACAAAATGGAAGGATTAGATATTCAGACCAGATCAAGATGGATACCGAGACATTTGGTGATTTTACGAGGCATCGTGGTGGCTGGGGTGGCCGTGGTCCATGGCGCGGTGGTGGTGGTGGACGTGCTCGAGGTGGTGGTTTTTATGGAAGGGGGTATGGCTATGGTGGTGGAAGAGGAAGAGGTGGACGTGGCATGTCTGGCGGTCGTTTTTAG 1914 0.4781 MASDTASRSSSAADSYIGCLISLTSKSEIRYEGVLYNINTDESSIGLKNVRSFGTEGRKKDGPQILPGDKVYEYILFRGTDIKDLQVKSSPPVQPTAPTNTDPAIIQSQYPRLATPSTSLPAASGSLTDASPHTTQLGHPGSNFQGPLYQPGGNVVSWGASSPSPNANGGGLAMPMYWQGYYGAPNGLPQLHQQSLLRPPPGLSMPSSMQQPMPSSMQQPMPSSLQQPMPSSLQQHMPSSLQQHMPSSMQQPLQYPNFSPSLPTGPSNFPEFPSAFLPVGTSSPNITSTSAPPLNLPTTISPPAPLATLAPETFQVSVPNKTPTVSLPAVTLGASLSSLASFTNGGPDVSAAVPTANKPTAISAPSFSYQTVPQQMAPSIVGSSNSSRTEPPVPSLVTPAQLLQSGQSVVASSKPSQTPHKDVEVVPVSSTSPPEPSVSVAAESQPPILPLPVTSRPAHRPGGASSQTPHSYGYRGRGRGRGIQGFRPAERFTEDFDFTAMNEKFKKDEVWGHLGKSNKKDGEENASDEDGGQYEDDGDVSNLEVKPVYNKDDFFDSLSCNSLNNDPQNGRIRYSDQIKMDTETFGDFTRHRGGWGGRGPWRGGGGGRARGGGFYGRGYGYGGGRGRGGRGMSGGRF 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04851 637 Gene3D - 6 92 - -
Vivi1g04851 637 ProSiteProfiles FFD box profile. 547 562 IPR025761 -
Vivi1g04851 637 FunFam Trailer hitch, isoform C 10 92 - -
Vivi1g04851 637 CDD LSm14_N 16 87 IPR025609 -
Vivi1g04851 637 MobiDBLite consensus disorder prediction 406 439 - -
Vivi1g04851 637 MobiDBLite consensus disorder prediction 513 542 - -
Vivi1g04851 637 PANTHER SCD6 PROTEIN-RELATED 228 630 - -
Vivi1g04851 637 ProSiteProfiles DFDF domain profile. 484 520 IPR025762 -
Vivi1g04851 637 ProSiteProfiles Sm domain profile. 8 91 IPR047575 GO:0003723
Vivi1g04851 637 SMART FDF_2 490 589 IPR019050 -
Vivi1g04851 637 Pfam Scd6-like Sm domain 16 89 IPR025609 -
Vivi1g04851 637 SUPERFAMILY Sm-like ribonucleoproteins 15 92 IPR010920 -
Vivi1g04851 637 MobiDBLite consensus disorder prediction 196 244 - -
Vivi1g04851 637 Pfam FDF domain 491 586 IPR019050 -
Vivi1g04851 637 MobiDBLite consensus disorder prediction 208 244 - -
Vivi1g04851 637 MobiDBLite consensus disorder prediction 513 527 - -
Vivi1g04851 637 MobiDBLite consensus disorder prediction 115 146 - -
Vivi1g04851 637 MobiDBLite consensus disorder prediction 406 484 - -
Vivi1g04851 637 ProSiteProfiles TFG box profile. 569 589 IPR025768 -
Vivi1g04851 637 SMART LSM14_2 10 110 IPR025609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04851 Vivi-Chr1 104728478 104734582 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04851 1 104728478 104734582 Vivi1g04851 1 104728478 104734582 ECH