Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03680 ATGCATAACAAGGACGTTTGTTCTCCTTCATCTCAAAGCGGATTCGGCGTCCGCCTCAACTCCGCCGGAAACATGCATTCGAACGCCGGCGCGTTTGCTTCGTTGTACTCTGTTCTGACTAACGAGCTCTCCGGAAACTGCAGCAATGGCGGAGGAGGAGCTTCGCTTTATCCGTACTCTGACTCCGGAACTGATTACGATTCGTGCGTGAACGTGATACAGAAGCATCAGGATATGGTGAATCGTCACAGTATGTGTCTCAGTCGTCTAGTGGAGACATCCAAAGAAGTTGAAGCTCTGCAGCAAGAGAACGGACAGCTCCGTGCGGTGAACAAGGAGTTGCAGAAGAATCTGAACCTCCTCGTTCAGGCTTCGCTGGAGAATCGATTTGGCGGTGGTGACTCTTCCATCCAGACACATTCGATTCCGTTTGATGCTTTGCACAGTTTCCGTGGTTTGAATCTTGGTGATGGAAAAGAAAACTGTGCTGATTGGAATAACAATAACATCAGTCACAATAACAAGGAGCTTCTGGAAGGTTCGGATGAGAGTCCAACGAGTGTGATAGATAATAACGGTGTTGAAACGGAGCGGTTCTCGCTGCCGAAAAGCATTTCTGTGAGATCCAATGGCTACTTGAAGCTTGCTCAGCCTCCCGCCGTCGTAACTAACAATAATGCTTGCCGCACCAAGGGTGCTACCCGCTCCCGCGCGTCTTCCACTCAACCTGATGCAGTTCAAAAAGTATATGTGCGAGGAGGCCAGAAAGAGGAAGAGCCTCTTGAGATGACTGTGTATAATCAAGGGATGTTCAAAACTGAGCTGTGTAACAAATGGCAGGAAACTGGCACATGTCCTTATAGTGACCACTGCCAATTTGCTCACGGTATCGGGGAGCTTCGCCCGGTGATCCGCCACCCACGCTACAAAACTGAGGTCTGTAGGATGGTCCTTGCTGGAGTTGTTTGTCCCTATGGCCATAGATGTCATTTCCGTCATGCACTTACTGAGCAAGAGAAAGCTTTATCACAATCTACGCCCAGATCAAGGAAATTGGAAAGATAA 1065 0.4892 MHNKDVCSPSSQSGFGVRLNSAGNMHSNAGAFASLYSVLTNELSGNCSNGGGGASLYPYSDSGTDYDSCVNVIQKHQDMVNRHSMCLSRLVETSKEVEALQQENGQLRAVNKELQKNLNLLVQASLENRFGGGDSSIQTHSIPFDALHSFRGLNLGDGKENCADWNNNNISHNNKELLEGSDESPTSVIDNNGVETERFSLPKSISVRSNGYLKLAQPPAVVTNNNACRTKGATRSRASSTQPDAVQKVYVRGGQKEEEPLEMTVYNQGMFKTELCNKWQETGTCPYSDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKALSQSTPRSRKLER 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03680 354 FunFam Zinc finger protein 36, C3H1 type-like 1 304 340 - -
Vivi1g03680 354 Coils Coil 90 117 - -
Vivi1g03680 354 ProSiteProfiles Zinc finger C3H1-type profile. 270 298 IPR000571 GO:0046872
Vivi1g03680 354 PANTHER CCCH ZINC FINGER/TIS11-RELATED 76 344 IPR045877 GO:0003729
Vivi1g03680 354 SMART c3hfinal6 270 297 IPR000571 GO:0046872
Vivi1g03680 354 SMART c3hfinal6 308 335 IPR000571 GO:0046872
Vivi1g03680 354 ProSiteProfiles Zinc finger C3H1-type profile. 308 336 IPR000571 GO:0046872
Vivi1g03680 354 FunFam zinc finger CCCH domain-containing protein 15-like 264 303 - -
Vivi1g03680 354 Gene3D - 304 340 - -
Vivi1g03680 354 Gene3D - 264 303 - -
Vivi1g03680 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 271 296 IPR000571 GO:0046872
Vivi1g03680 354 SUPERFAMILY CCCH zinc finger 267 302 IPR036855 GO:0046872
Vivi1g03680 354 SUPERFAMILY CCCH zinc finger 304 338 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03680 Vivi-Chr1 78744496 78746994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03680 59 343 C3H Transcription Factor Family AT1G68200 50.853 1.27e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi1g03680 zf-CCCH 4.3e-11 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03680 1 78744496 78746994 Vivi1g03680 1 78744496 78746994 ECH