LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g03665	ATGGAGGCGCAACCCCAACCTCCAACACCGTCAGCACCACCACCGTTATCCTCCGTCGCACCACCACCACCACACCTCAACTACCCCGATTCAGTCGACTCGTCCCCTCGTTCCCGCAACACGGACTCATGGGACGAGCCTTTCCCTCCGGCGTCAACGAAACTCCGTCTCATGTGCAGTTACGGCGGCCACATCGTTCCTCGTCCACACGATAAATCGCTGTGCTACGTCGGCGGTGATACTCGAATCGTGGTGGTTGAACGTGTGGCCTCACTCGCGGAGTTATCCACGCGCCTCTCGAAAACCTTCCTTAATGGAAGAGCGTTCACTCTGAAGTATCAGCTTCCGAACGAAGATTTGGATTCACTGATTTCTGTTACGACTGATGAGGATTTGGAGAATATGATCGATGAATACGATCGAACGGCTTCGGTCAATTCCTCTATCAAACCCTCGCGGATTCGCCTTTTTCTGTTTCCGACTAAACCTGAATCTGCTCACTCGATTCCGCCGCAGATTCTCGATACTTCGGCGAAATCGGATGATTGGTTCCTTGATGCGTTAAACGGTGCTGGATTGCTTAACCGAGGGTTTTCTGATTCGGCTTCTGTGAACAATCTGTTAGGTCTCGATGATGATGTTGCTGGGAATAATATTGAACCTGGTATAAGGGAGCCTCCTGAAGGTGTTTCTCAACCTGGATCTTTTGGTAAGAATTTGAAACAGGATGTTCATTCTGTTCCTGATTCTCCTATGATGGAGACTTCATCGTCGTTTGGTTCGACTTCCTCGTCTCCGTCGTTGGCAAATTTGCCTCCGATTAGAGTGCATGTGGAAGATGGTGGTTCTACTGGAGTTAGGGTACAGCAGCAACAACTTCAACAACTGCAACAGCAGGATCAGAAGGTTTTGGGGATTGAGGAACAGTTTGCTCAAATGGGAGTTGGTGTTGGTCAGAAGCAGGATGAGGGATTTGCTGTGATGTCTTCGCCGCCTCATCCGCCGGTTCCGACTACGCTGGGTACGGCGGTGATTGGTGTTCCGATTGGTTCTGCTGTGGCCGTTGGTGATTATCAGAATAGAGTTTTTTCTGATGATGAGAGATCTGATCATGGTGTGGCTGTGGGATATAGAAAACCACCAACTCCTCAGCCACAGGTTGTTCAACAGCCACCTGCTCAAACTCAGCAACAACCACAACCACAACAACCTCAATTTCAACAAAAGTCGAGTGGCGGCGGCGGCGGCGCTGATTTGCCTTCTCCTGATTCAGTTGCAAGTGACAATAGTAGTCTTTCAAATCCAATGTCACGTCAAAAACCTGTTATCTATCAAGAGCAAGTTCAGATTCAATCTGGAGCTTCAAGGGTTCTAAGTAATCCTGTGGATCCGAAACTCAATTTGTCTGATCCACAAGGTAGGATCCAATTGCAGCAACATGTACAGGACTCTGGATATTTACTGCAACAGCAATTCGAACTCCAGCAGCAACAACAGCAATTTGAACTTCAGCAACATCAGCAACAGTTTGAACTCCAGCAGCAGCAGCAACAACAGGCTCAACAACAACAGCAGCCTCAACATCAACAACAGCAGCAGCAGCAGCCTCAACATCAACAACAGCAGCAGCAGCCTCAACAGGCGCAACAACAGCAGCTTCAACAACAGCTTCAACATCAGCAACAGCAGCAGTTTATTCATGGGGGACACTACATTCATCATAACCCTGCAATTCCTGCATACTATCCTGTATATCCTTCACAGCAACAGCCCCATCATCAGGTTTACTATGTTCCTGCAAGACAGCCACAAGCTTACAATCTTCCTGTGCAGCAGGCTAATGTAGGGGATTCTACCACAACAATCTCTTCTGGTAGACCCCAAAACCCTCCAAACCCTACTACATTGGTTCAACCAAATGCAGCTTACAACCCCATAAGAAATGCTCCCCTACCCAAAACGGAAATGACAGCAGCTGCTTACAGAGCTGCAGCTTCAGGCAACCCTCAATTTGTACAAGTTCCCACAGCCCAGCATCAGCAACAATATGTCACTTACTCTCAGATCCCCCATCCTTCCCAATCCATGGCCCCTAATTCTGCTGCTCCTGCCAATTATGCTTATGAGTTTGCTGATCCTGCTCATGCTCAAATATACTACTCTCAGCCTATGGCGCCCTCAATGCCTTCTCAGTACCAGACCATGGCAGCTGCTACTATGATGCAACCGGAGATTTCTGCACAGCATCCCTCGGATGGCATGAAGCAACAGATAAGAACCTCACAGCAGCTATAA	2295	0.4854	MEAQPQPPTPSAPPPLSSVAPPPPHLNYPDSVDSSPRSRNTDSWDEPFPPASTKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIVVVERVASLAELSTRLSKTFLNGRAFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASVNSSIKPSRIRLFLFPTKPESAHSIPPQILDTSAKSDDWFLDALNGAGLLNRGFSDSASVNNLLGLDDDVAGNNIEPGIREPPEGVSQPGSFGKNLKQDVHSVPDSPMMETSSSFGSTSSSPSLANLPPIRVHVEDGGSTGVRVQQQQLQQLQQQDQKVLGIEEQFAQMGVGVGQKQDEGFAVMSSPPHPPVPTTLGTAVIGVPIGSAVAVGDYQNRVFSDDERSDHGVAVGYRKPPTPQPQVVQQPPAQTQQQPQPQQPQFQQKSSGGGGGADLPSPDSVASDNSSLSNPMSRQKPVIYQEQVQIQSGASRVLSNPVDPKLNLSDPQGRIQLQQHVQDSGYLLQQQFELQQQQQQFELQQHQQQFELQQQQQQQAQQQQQPQHQQQQQQQPQHQQQQQQPQQAQQQQLQQQLQHQQQQQFIHGGHYIHHNPAIPAYYPVYPSQQQPHHQVYYVPARQPQAYNLPVQQANVGDSTTTISSGRPQNPPNPTTLVQPNAAYNPIRNAPLPKTEMTAAAYRAAASGNPQFVQVPTAQHQQQYVTYSQIPHPSQSMAPNSAAPANYAYEFADPAHAQIYYSQPMAPSMPSQYQTMAAATMMQPEISAQHPSDGMKQQIRTSQQL	764

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g03665	764	MobiDBLite	consensus disorder prediction	423	439	-	-
	Vivi1g03665	764	Coils	Coil	503	523	-	-
	Vivi1g03665	764	SUPERFAMILY	CAD & PB1 domains	70	169	-	-
	Vivi1g03665	764	MobiDBLite	consensus disorder prediction	1	49	-	-
	Vivi1g03665	764	MobiDBLite	consensus disorder prediction	365	439	-	-
	Vivi1g03665	764	MobiDBLite	consensus disorder prediction	219	268	-	-
	Vivi1g03665	764	MobiDBLite	consensus disorder prediction	389	414	-	-
	Vivi1g03665	764	MobiDBLite	consensus disorder prediction	744	764	-	-
	Vivi1g03665	764	MobiDBLite	consensus disorder prediction	1	29	-	-
	Vivi1g03665	764	CDD	PB1_UP2	58	159	-	-
	Vivi1g03665	764	ProSiteProfiles	PB1 domain profile.	54	152	IPR000270	GO:0005515
	Vivi1g03665	764	Pfam	PB1 domain	70	160	IPR000270	GO:0005515
	Vivi1g03665	764	Gene3D	-	74	160	-	-
	Vivi1g03665	764	MobiDBLite	consensus disorder prediction	249	268	-	-
	Vivi1g03665	764	PANTHER	OS05G0427100 PROTEIN-RELATED	27	550	-	-
	Vivi1g03665	764	MobiDBLite	consensus disorder prediction	31	47	-	-
	Vivi1g03665	764	SMART	PB1_new	69	161	IPR000270	GO:0005515
	Vivi1g03665	764	MobiDBLite	consensus disorder prediction	527	564	-	-
	Vivi1g03665	764	MobiDBLite	consensus disorder prediction	615	640	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g03665	Vivi-Chr1	78591870	78594753	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g03665	51	231	MAP Kinase Kinase Kinase	AT1G79570	34.783	9.20e-25	108

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi1g03665	1	78591870	78594753	Vivi1g03665	1	78591870	78594753	ECH
	Vivi1g03665	1	78591870	78594753	Vivi4g00295	4	6598826	6601686	ECH