Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03660 ATGGACTCAAATTCATCTAGCTTTCTTTTGAACTCTTCGAATTTTCACTCGGTTTTCTACCAAGATAAACACGATGATGGCATAATTGATCTCGGTCTTAGTCTTGGAACGGTTCATCACGATGCTTATAATTCTTCAACCAACTTGTATGATGATGATATTATGGAATGGCCTAATGTCAAGAACTCAAGCACGGCGCATTCGAGATCTGTTCAAGAAAGCTTTGATGAAGAGATAGAAGGGGTTCAGAGCAATGAGAGATGGGCTTATGTGAAGGTTAACATGGATGGAGTCTCCATTGGTAGGAAAATTTGTATTCTTGATCATGGAGGGTATTCAAGTCTAGCAATTCAACTAGAAGACATGTTTGGTAGCCACTCAGTTTCTGGTATAAGATTGTTTCAATCTGGATCAGAATATTCATTGTTCTATAAAGACAGAGAAGATAATTGGAGGGTTGTAGGTGATGTTTCTTGGAAGGAGTTTGTGGAATGTGTGAAAAGGCTAAGGATTGCAAGAAAGAATGAAGGCTATGTTAATTGA 543 0.3812 MDSNSSSFLLNSSNFHSVFYQDKHDDGIIDLGLSLGTVHHDAYNSSTNLYDDDIMEWPNVKNSSTAHSRSVQESFDEEIEGVQSNERWAYVKVNMDGVSIGRKICILDHGGYSSLAIQLEDMFGSHSVSGIRLFQSGSEYSLFYKDREDNWRVVGDVSWKEFVECVKRLRIARKNEGYVN 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03660 180 ProSiteProfiles PB1 domain profile. 88 176 IPR000270 GO:0005515
Vivi1g03660 180 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 48 176 IPR003311 GO:0005634|GO:0006355
Vivi1g03660 180 Gene3D - 82 179 - -
Vivi1g03660 180 Pfam AUX/IAA family 52 176 IPR033389 -
Vivi1g03660 180 SUPERFAMILY CAD & PB1 domains 88 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03660 Vivi-Chr1 78475929 78477550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03660 83 171 B3 DNA Binding Superfamily AT1G19220 35.955 4.00e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vivi1g03660 AUX_IAA 3.7e-23 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03660 1 78475929 78477550 Vivi1g03660 1 78475929 78477550 ECH