Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03613 ATGGGTTCGAAGATGGAAGGAACTTCCACACCAGCTGTTCGCCGGGATCCTTACGAAGTTTTGTCCGTTTCGAGGGAATCCACTGACCAGGAAATTAAAACCGCTTACAGAAAGCTTGCTCTCAAGTATCACCCTGACAAAAATGCCAGCAATCCCGAGGCTTCGGAACTATTCAAAGAGGTTGCATATTCTTATAATATCTTATCTGACCCAGAGAAGAGAAGGCAGTATGACAGTGCAGGATTTGAGGCACTTGATGCTGATAGCATGGACATGGAAATCGATTTATCTAATCTTGGGACTGTGAACACGATGTTTGCAGCTTTATTCAGCAAGCTGGGTGTCCCCATCAAGACTACCATTTCAGCTAATGTTCTTGAAGAGGCTTTGAATGGCACAGTTACTGTCAGACCCCTTCCAATTGGAACATCAGTTAGTGGAAAGGTAGAGAAGCAATGTGCTCATTTTTTTGGCGTGACAATAAGTGAGCAGCAAGCTCAGTCAGGGATTGTCGTTAGAGTTACTTCAACTGCACAAAGCAAATTCAAGTTGCTCTATTTCGAACAAGATGCAAACGGTGGCTATGGTTTGGCCTTGCAGGAAGATAGTGAGAAGACTGGGAAGGTGACATCTGCAGGAATGTATTTCTTGCATTTTCAAGTGTACAGAATGGATTCAACTGTGAATGCGTTAGCAATGGCAAAGGATCCTGAGGGGGCTTTCTTTAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTCTCGGAATTAAAGCCTGGCACACATATATTTGCTGTTTATGGAGATAACTTCTTTAAGACTGCTAGCTATACAATTGAAGCAGTATGTGCAGAAACACTTGAGGATACCACCGAAAAACTTAAGGATATTGAGGCTCAAATTTTAAGAAAGAGGAATGAGCTACGCCAGTTCGAATCAGAGTATAGAAAGGCATTGGCACGCTATCAGGAAGTGACAGACAGATACACAAAAGAAAAACAGTCTGTAGACGAGCTTCTGAAACAAAGGGATGGTATTCATTCTACATTCACCATTGTTAAGCCAACCAATATTAGTGGAAGTGGTAGTAATTTAAGCAATGGAAGTTCTAGCAAAATTTCTGGTGAAGATTCCAAAGGTGAGAGCCCCGGGGAAGATGGAGGATCAGATGGCAAGGATAAATCTGGCAAAAAGAAATGGTTCAACCTTAATCTTAAGGGGTCGGGTTCGGGTTCTGGTTCTGATAAGAGGTTGATATGA 1257 0.4248 MGSKMEGTSTPAVRRDPYEVLSVSRESTDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYNILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTISEQQAQSGIVVRVTSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAETLEDTTEKLKDIEAQILRKRNELRQFESEYRKALARYQEVTDRYTKEKQSVDELLKQRDGIHSTFTIVKPTNISGSGSNLSNGSSSKISGEDSKGESPGEDGGSDGKDKSGKKKWFNLNLKGSGSGSGSDKRLI 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03613 418 MobiDBLite consensus disorder prediction 377 399 - -
Vivi1g03613 418 SUPERFAMILY Chaperone J-domain 15 86 IPR036869 -
Vivi1g03613 418 SMART dnaj_3 15 73 IPR001623 -
Vivi1g03613 418 MobiDBLite consensus disorder prediction 1 24 - -
Vivi1g03613 418 FunFam Chaperone protein dnaJ 16 1 98 - -
Vivi1g03613 418 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 3 407 - -
Vivi1g03613 418 CDD DnaJ 16 70 IPR001623 -
Vivi1g03613 418 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Vivi1g03613 418 Gene3D DnaJ domain 2 98 IPR036869 -
Vivi1g03613 418 PRINTS DnaJ domain signature 73 92 IPR001623 -
Vivi1g03613 418 PRINTS DnaJ domain signature 18 36 IPR001623 -
Vivi1g03613 418 PRINTS DnaJ domain signature 53 73 IPR001623 -
Vivi1g03613 418 PRINTS DnaJ domain signature 36 51 IPR001623 -
Vivi1g03613 418 Coils Coil 286 341 - -
Vivi1g03613 418 ProSiteProfiles dnaJ domain profile. 16 81 IPR001623 -
Vivi1g03613 418 MobiDBLite consensus disorder prediction 356 376 - -
Vivi1g03613 418 Pfam DnaJ domain 16 78 IPR001623 -
Vivi1g03613 418 MobiDBLite consensus disorder prediction 356 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03613 Vivi-Chr1 77793273 77799146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03613 7 88 C2H2 Transcription Factor Family AT1G74250 42.529 1.12e-13 70.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03613 1 77793273 77799146 Vivi1g03613 1 77793273 77799146 ECH