Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03582 ATGAGACCACAAGGAAACCCTTTAGATCTTAACAATTTGCCTGATGAATACTCTAGAGATCATGGCAAACAACTCCTTGAAGACACCGATCCACCCGGTTGTAGGAAAAAGAAAAACGGCGGGAAGGAAGGAAAAGAAGAGTGTGGGAAGGTGTATGAGTGTAGATTTTGTTCCCTCAAGTTCTGTAAATCTCAGGCTCTTGGGGGGCACATGAACCGTCACCGACAAGAAAGGGAAACTGAGACACTTAATCATGCTCGTCAGTTGGTCTTCAGAAATGATCATAACATTGCACCACAACCTCCTTCTCACCTTGTAGGATGTTGTCCACCCCCTATAGCAACAGGTGGTTATATTCCAGCAAATACCATGGGAGTTGATCCAACAATGCCACCAAGATTTCCAAGATACTTCTCTGGTTCATCGTCTTCGACTCACATTCCACCGCCTCCACCACCACCTCCACCACAGCCATTTCTCTACTCTTCCCCTTCGCGTCCAGTTTCATTTCCATCACACGTGATTCCTCATCATCCAATGAACGAATATCACGTCGGACACGTGATGAGTAGCAGCCACAGTCACCACCAGCAGCAGTATGGTGGACATGGACAACACAACTTTGGCGGAGGTGAGTCGAATTACACGTGCATAGGTGCACCGGTTGGACAAGGCTTTAGTGGCGGTGGTAATGGTAATGGTGGTGGTGGGAAGGATCATCATAATCATCAAGAGGAAGGAGTAGGAGGAGGAGGAGGGTTGAACTGGGGAAGAAGCTATGCAGGAACAACACAGCAGCATCGTTTGGATAGTCATTCAGCAGCGATCAATCGGTTTCAAGATGGTTTCTAA 852 0.4742 MRPQGNPLDLNNLPDEYSRDHGKQLLEDTDPPGCRKKKNGGKEGKEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDHNIAPQPPSHLVGCCPPPIATGGYIPANTMGVDPTMPPRFPRYFSGSSSSTHIPPPPPPPPPQPFLYSSPSRPVSFPSHVIPHHPMNEYHVGHVMSSSHSHHQQQYGGHGQHNFGGGESNYTCIGAPVGQGFSGGGNGNGGGGKDHHNHQEEGVGGGGGLNWGRSYAGTTQQHRLDSHSAAINRFQDGF 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03582 283 PANTHER ZINC FINGER PROTEIN JAGGED 32 270 IPR045320 GO:0003700
Vivi1g03582 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Vivi1g03582 283 MobiDBLite consensus disorder prediction 228 269 - -
Vivi1g03582 283 MobiDBLite consensus disorder prediction 1 45 - -
Vivi1g03582 283 MobiDBLite consensus disorder prediction 135 160 - -
Vivi1g03582 283 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Vivi1g03582 283 Gene3D Classic Zinc Finger 34 102 - -
Vivi1g03582 283 SUPERFAMILY beta-beta-alpha zinc fingers 50 80 IPR036236 -
Vivi1g03582 283 MobiDBLite consensus disorder prediction 145 160 - -
Vivi1g03582 283 FunFam Zinc finger protein STAMENLESS 1 29 100 - -
Vivi1g03582 283 MobiDBLite consensus disorder prediction 14 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03582 Vivi-Chr1 77020306 77022685 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03582 4 225 C2H2 Transcription Factor Family AT1G13400 40.444 3.61e-28 105
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03582 1 77020306 77022685 Vivi1g03582 1 77020306 77022685 ECH