Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03581 ATGAGACCAGATGGAAATCCATTAGATCTTAACAATCTTCCTGATGACAACTCTAGAGATCATCATGTTACAGGTTATAAGGAAAAAGGAGGCGGCGAAGATGATAGAAAAGACGAGGTTGAAAAGGTCTATGAATGTAGATTTTGTTCCCTCAAATTCTGCAAGTCTCAGGCTCTTGGAGGACACATGAACCGTCATCGCCAAGAAAAGGAAACAGAAAAGTTGAACAATGCTCGTCAGCTTCTCTTACGTAATGATCACAACCTTGTTGCTCAAGCTGCACTTCACATAGGATGCTATCCAACAATGCCTATGAGATTTCCATCATCTTTCTCTGGTTCATCATCTTCAACTCAAGCACAATCACAAGTTCAACAGTACTTGTATAATTCATCTTCAAGGCAAATTTCTTTCCCTCCACATTTCATTCCACAGCATCAAATGACCGATTACCGTGTGAGTCACCAGCAGCAGCAGCAATACATGGCAGGTGGAGGAGGAGGTGATAAGTCAAGTTACACGTGCATAGGTGCACCAGTTGGAAACAAATTTCCAGATCATACTCCGACGATCAATCGGTTTCAAGACGGTAATTTGTAA 600 0.4167 MRPDGNPLDLNNLPDDNSRDHHVTGYKEKGGGEDDRKDEVEKVYECRFCSLKFCKSQALGGHMNRHRQEKETEKLNNARQLLLRNDHNLVAQAALHIGCYPTMPMRFPSSFSGSSSSTQAQSQVQQYLYNSSSRQISFPPHFIPQHQMTDYRVSHQQQQQYMAGGGGGDKSSYTCIGAPVGNKFPDHTPTINRFQDGNL 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03581 199 Coils Coil 65 85 - -
Vivi1g03581 199 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Vivi1g03581 199 MobiDBLite consensus disorder prediction 1 37 - -
Vivi1g03581 199 SUPERFAMILY beta-beta-alpha zinc fingers 41 72 IPR036236 -
Vivi1g03581 199 Gene3D Classic Zinc Finger 24 97 - -
Vivi1g03581 199 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Vivi1g03581 199 PANTHER ZINC FINGER PROTEIN JAGGED 36 165 IPR045320 GO:0003700
Vivi1g03581 199 MobiDBLite consensus disorder prediction 14 37 - -
Vivi1g03581 199 FunFam Zinc finger protein STAMENLESS 1 20 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03581 Vivi-Chr1 76944276 76946090 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03581 1 182 C2H2 Transcription Factor Family AT1G13400 44.828 1.07e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g03581 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03581 1 76944276 76946090 Vivi1g03581 1 76944276 76946090 ECH