Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03540 ATGGCCACCGATGGCCACGACTCTCGACGCAAGCATCACCGATCATCCTCTCCGGACGACCACGACAAATCCTCAAAGCGTCATAAGCACCGTCACCATCATAGCCACCGTCATCGCCATGGAAGTAAAAAACGCGATGAGGAGATTCAATACGATGGCGAAATTGTTGCCGCGGTTCCTTCTCCAAGTCCTGTTTCTGATCCTGCTTCGCATAATCATCCCCCTGATGATGATGTTGAGGAGGGAGAGATTCTCGATGACGAGCCTTTGGGCGGTGAGGTTGGAATTGGAAAGAAGCAGATTGAATCTGATGTTGAATCTGGGGAAATTGAGGTGAAAGAAGATCGAGATCTTCGATCTGAGAAGAAAAATCCGGGACTTATTGCTAAAAGTTTGAAAACTGAAAGTGAGGACTTCAACAATGATAGATTTATTAGGCCTACTTCCGATGCAGACGATGGGAAATGGCGTCAGAGGCATATTGAATCTCGAAGTCATGAAGATGATGATTCTCCAAACCACTCGAGAGATGAAACTCAAGTTGGGAGGGATGTTCGAGCTGGTACTGATTCTTTGGGCAATGGGTATTTAGATGTTAAGTCTTCTAAAGGGGATAAGTGGCAGAATGGGGAGTTTGGACATTTTAAAGGAAATGAGAAACTAAAAGGTGACTATGATGATGAAGCACTGGAGGCTATTAGAAAGAAGGAAAATTCCCACAAGAATGCCATTGAAAGTGGAGAAGAAAAGCATAGAATGCCAGGTAATTCTCCTTTGCACGATGGATACAGAAGTCGATCAAGATCAATTGGCCATACAAGAGACAGGTCTCGTTCTCGCAGTGCTGTAGAAGAGTATGTCCATCCCAGTAGCAGGCACTCTAGGGAACATGGTTCCCTTTATTATACTAGCAGACATAAGACTGAATATGATCTTGATGAGGAAAGAGTGAGTGCGTACAGAAGGGAGCATCGTCACAGCAGTAAGGATTTGGTGGAGGATGATAAACCGGAACACAGTACTAGGTATGACAGTCGGGATGTCCGGGATAGGGATAGGGCTACCCACAGGAGTAGGGACAGAGATATGGATAGAGATTTGCACAGAGAAAAGAAGCGAGAGGAAACATGCAGGAATAAGGAGGTTGATTGGGTGCGTAGAAGGGAGAAAGAACGTGGAAGGAGCCACGACAGACATAGAAGCGACATTGAAAAAGATAGGAGCAGGGAAAGGGATGAGGGCAGGGATAGGAGAAGAGAAATGGAAAGACATAGGAGCAAAGACACAGTTTATGAGAGGGATAGGAGAAGGGAATTGGAAAGAGATATGAGCAAGGACAGAATAGGTGGTGAGAGAGATAGAGACTGGAAGAGTGAATGGGATTATAGGACCCGGGAAAGGGATAATATTAAGGAGAGGGAGAGACGAGATGATAGATATCGACACAATGACAAAGATGTTCCTAATGGTAAGGATAAGCATATGCGTCGTGAGGATGGCAATGACAGTGGGGACAGATATAAGAAACATTCAAGACATGAAGAAAATGGACACCACACAGATAGAAAAAGGAACTATACCATGGAAGAGGATGGAAGGAAACCCAAAGGTGAGATTGAACAAGATGATGTAGACGAGGATACATTGCAACTACCTGAGCAAGAAGAGGAAGATCTGAACAGAATAAAAGAGGAGAGTAGAAGAAGAAGGGAAGCTATAATGGAAAAATACAAAAAGCAGAATCAGAAATTAGAACAAGCAGCTGGAAATGAAGGAAAAGGCAAGGATGTGGAGATTCATACTGACATTTTTAAAGCAGTTGATGGTAAGAGTGATGATGTTGATAATGTGGAACCATCATTTTCTGTTGGGAAATCTCCACCGGAAAATGTAAATGTCGGCTCAGAGAAGGTACTTGGTGCTGGGGGCCTAGGCGAGGGTACTCCTAAGAGTGAAAGGTCAGCTGACAAGTATTGTGATGATATATTTGGTGAGACACCAACTGGAGTTCGGAAATCGGGAAAAGGAGATGGATTATTAATTGAGAGGGTTGGCCTGCATGACAACTGGGATGATGCAGAGGGCTATTACAGTTATCGTTTTGGGGAAATACTTGATGGCCGATACGAAGTTACTGCTGCACATGGGAAGGGTGTCTTTTCAACAGTTGTACGAGCTAAGAATCTGAAAACTGGTAATGGTGAGCCAGATGAAGTAGCAATAAAAATTATTCGTAATAATGACACCATGTACAAGGCTGGTTTGGATGAGTTGGTCATTTTAAAGAAATTAGTAGGTGCAGATCCGGATGATAAGCGTCATTGTGTTCGTTTCCTTTCAAGCTTTAAGTATAGAAATCATCTATGTTTAGTTTTTGAATCTCTAAATATGAATCTGCGTGAAGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACTGCTGTGAGGGCATATGCAAAACAGCTTTTTATTGCACTGAAGCATCTCCGTAACTGTGGTGTTCTGCACTGTGATATAAAGCCTGACAATATGTTGGTGAATGAAGCCAAAAATGTTTTAAAGCTTTGTGACTTTGGGAATGCCATGTTTGCTGGTAAAAATGAAGTAACACCATATCTCGTGAGTCGCTTTTATCGTGCCCCTGAAATAATTCTTGGCTTGCAGTATGATCATCCATTGGATATTTGGTCTGTAGGCTGTTGTTTGTATGAATTGTATACAGGGAAGGTTCTTTTTCCAGGGCTCACAAACAACGACATGCTACGGCTTCACATGGAATTGAAGGGCCCTTTTCCGAAAAAGATGCTCCGTAAGGGAGCATTTACTGAACAACATTATGACCAGGACCTGAGTTTTCATGCCACAGAGGAGGATCCTGTAACAAAAAAGACCATAAAGAGGATGATTCTTAACATAAAGGCGAAAGATATTGGAACGATCATCACTGGCTCTCCTGGGGAGGATCCAAAAATGTTGGCCAATTTTAAAGATCTTCTAGATAAAATTTTTGTCTTGGATCCGGACAAGAGGTTGACAGTCTCACAAGCATTGAACCACCCATTCATCACTGGCAAGTGA 3084 0.4287 MATDGHDSRRKHHRSSSPDDHDKSSKRHKHRHHHSHRHRHGSKKRDEEIQYDGEIVAAVPSPSPVSDPASHNHPPDDDVEEGEILDDEPLGGEVGIGKKQIESDVESGEIEVKEDRDLRSEKKNPGLIAKSLKTESEDFNNDRFIRPTSDADDGKWRQRHIESRSHEDDDSPNHSRDETQVGRDVRAGTDSLGNGYLDVKSSKGDKWQNGEFGHFKGNEKLKGDYDDEALEAIRKKENSHKNAIESGEEKHRMPGNSPLHDGYRSRSRSIGHTRDRSRSRSAVEEYVHPSSRHSREHGSLYYTSRHKTEYDLDEERVSAYRREHRHSSKDLVEDDKPEHSTRYDSRDVRDRDRATHRSRDRDMDRDLHREKKREETCRNKEVDWVRRREKERGRSHDRHRSDIEKDRSRERDEGRDRRREMERHRSKDTVYERDRRRELERDMSKDRIGGERDRDWKSEWDYRTRERDNIKERERRDDRYRHNDKDVPNGKDKHMRREDGNDSGDRYKKHSRHEENGHHTDRKRNYTMEEDGRKPKGEIEQDDVDEDTLQLPEQEEEDLNRIKEESRRRREAIMEKYKKQNQKLEQAAGNEGKGKDVEIHTDIFKAVDGKSDDVDNVEPSFSVGKSPPENVNVGSEKVLGAGGLGEGTPKSERSADKYCDDIFGETPTGVRKSGKGDGLLIERVGLHDNWDDAEGYYSYRFGEILDGRYEVTAAHGKGVFSTVVRAKNLKTGNGEPDEVAIKIIRNNDTMYKAGLDELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLQYDHPLDIWSVGCCLYELYTGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTEQHYDQDLSFHATEEDPVTKKTIKRMILNIKAKDIGTIITGSPGEDPKMLANFKDLLDKIFVLDPDKRLTVSQALNHPFITGK 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03540 1027 MobiDBLite consensus disorder prediction 471 541 - -
Vivi1g03540 1027 ProSiteProfiles Protein kinase domain profile. 709 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03540 1027 MobiDBLite consensus disorder prediction 25 41 - -
Vivi1g03540 1027 SUPERFAMILY Protein kinase-like (PK-like) 696 1026 IPR011009 -
Vivi1g03540 1027 ProSitePatterns Serine/Threonine protein kinases active-site signature. 836 848 IPR008271 GO:0004672|GO:0006468
Vivi1g03540 1027 MobiDBLite consensus disorder prediction 1 455 - -
Vivi1g03540 1027 CDD STKc_PRP4 708 1024 IPR044092 GO:0004674|GO:0006468|GO:0045292
Vivi1g03540 1027 SMART serkin_6 709 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03540 1027 PANTHER DUAL SPECIFICITY PROTEIN KINASE 409 1025 - -
Vivi1g03540 1027 FunFam Serine/threonine-protein kinase PRP4 homolog 769 1025 - -
Vivi1g03540 1027 Gene3D Phosphorylase Kinase; domain 1 680 768 - -
Vivi1g03540 1027 Coils Coil 563 590 - -
Vivi1g03540 1027 MobiDBLite consensus disorder prediction 99 128 - -
Vivi1g03540 1027 MobiDBLite consensus disorder prediction 1 24 - -
Vivi1g03540 1027 MobiDBLite consensus disorder prediction 471 567 - -
Vivi1g03540 1027 Gene3D Transferase(Phosphotransferase) domain 1 769 1025 - -
Vivi1g03540 1027 MobiDBLite consensus disorder prediction 265 455 - -
Vivi1g03540 1027 MobiDBLite consensus disorder prediction 135 184 - -
Vivi1g03540 1027 FunFam serine/threonine-protein kinase PRP4 homolog 680 768 - -
Vivi1g03540 1027 Pfam Protein kinase domain 711 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g03540 1027 MobiDBLite consensus disorder prediction 204 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03540 Vivi-Chr1 75617406 75623891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03540 716 1021 Core Cell Cycle Gene Families AT1G66750 30.599 1.72e-28 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vivi1g03540 Pkinase 7.1e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03540 1 75617406 75623891 Vivi1g03540 1 75617406 75623891 ECH