Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02945 ATGCCGTCATCGGACTCTGGTGAGAGCCGCCGATCAATCAAACCACAGAACCGTCCCGGAGCACCTGCACCGGAGCAAGAGAATCTCCCATGTCCTAGATGTGATTCAACCAACACCAAGTTTTGCTACTACAACAACTACAACTACTCTCAGCCTCGTCATTTCTGCAAAGCTTGCCGTAGGTACTGGACTCACGGCGGCACTCTCCGTGACATCCCCGTCGGAGGCGGCACCAGAAAAAACGCAAAACGCTCCCGCACTCATCATGTTGCTGTTACTTCCTCTTCTTCATCTTCCGCCGTCACATCAGCACCGGAGCATAGCTATCATTCAATGGTGGGCCCCTCTTTTCCATATGGTGGTGTTGACGGTGAGGGAAAACAGAATATGAGTGTTTGCGGGAGTTTCACTTCATTGTTGAACAACAACAACACTCAAAATTCTGGGTTTCTGGCATTAGGTGGGTTTGGGCTTGGGCTTGGAGATATGGGGTTTGGGATAGGGAGAGGGGAATGGAGTTTTCCTGGAATGATGGATGGATCAAACATTGGTGTGCCGGTTGTGTCTTCTGGTATCGGAAACTCGTGGCAGTTAGAAGGTGCAGAAAATGGTTTTGTTGGCGGTGATTGTTTCTCTTGGCCTGGACTTGCAATTACTACACCAGGAAATGGTCTCAAATGA 681 0.4963 MPSSDSGESRRSIKPQNRPGAPAPEQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKACRRYWTHGGTLRDIPVGGGTRKNAKRSRTHHVAVTSSSSSSAVTSAPEHSYHSMVGPSFPYGGVDGEGKQNMSVCGSFTSLLNNNNTQNSGFLALGGFGLGLGDMGFGIGRGEWSFPGMMDGSNIGVPVVSSGIGNSWQLEGAENGFVGGDCFSWPGLAITTPGNGLK 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02945 226 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 152 IPR045174 GO:0003700|GO:0006355
Vivi1g02945 226 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Vivi1g02945 226 MobiDBLite consensus disorder prediction 88 106 - -
Vivi1g02945 226 MobiDBLite consensus disorder prediction 74 107 - -
Vivi1g02945 226 Pfam Dof domain, zinc finger 27 83 IPR003851 GO:0003677|GO:0006355
Vivi1g02945 226 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Vivi1g02945 226 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02945 Vivi-Chr1 64227013 64228363 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02945 1 226 C2C2-Dof Transcription Factor Family AT3G50410 46.899 7.34e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi1g02945 zf-Dof 9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02945 - - cam:101488684 356.681