Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02944 ATGCCGTCATCGGACTCTGGTGAGAGCCGTCGATCAATCAAACCACAGAACCGCCCCGGAGCACCTGCACCGGAGCAAGAGAATCTCCCATGTCCTCGTTGTGATTCAACCAACACCAAGTTTTGCTACTACAACAACTACAACTACTCTCAGCCTCGTCATTTCTGCAAAGCTTGCCGTAGGTACTGGACTCACGGCGGCACTCTCCGTGACATCCCCGTCGGAGGCGGAACCAGAAAAAACGCAAAACGCTCCCGCACTCATCATGTTGCTGTTACTTCCTCCTCTTCCTCTTCCGCCATCACATCAGCACCGGAGCATAGCTATCATTCAATGGTGGCACCGTCTTGTCCGTATGGTGGTGTTGACGGCGAGGGGAAGCAGAATATGAGTGTTTGCGGGAGTTTCACTTCGTTGTTGAACAACAACAACAACAACACTCAAAACTCTGGGTTTCTGGCATTAAGTGGGTTTGGGCTTGGGCTTGGACACGGGCTTGGAGATATGGGGTTTGGGATAGGAAGAGGGGAATGGAGTTTTCCTGGGATGATGGATGGATCGAACATTGGTGTGCCGGTTGTGTCTTCTGGTATCGGAAACTCGTGGCAGTTGGAAGGTGGCGAAAATGGTTTTGTTGGCGGTGATTGTTTCTCTTGGCCTGGACTTGCAATTTCTACACCAGGAAATGGTCTCAAATGA 699 0.5107 MPSSDSGESRRSIKPQNRPGAPAPEQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKACRRYWTHGGTLRDIPVGGGTRKNAKRSRTHHVAVTSSSSSSAITSAPEHSYHSMVAPSCPYGGVDGEGKQNMSVCGSFTSLLNNNNNNTQNSGFLALSGFGLGLGHGLGDMGFGIGRGEWSFPGMMDGSNIGVPVVSSGIGNSWQLEGGENGFVGGDCFSWPGLAISTPGNGLK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02944 232 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Vivi1g02944 232 Pfam Dof domain, zinc finger 27 83 IPR003851 GO:0003677|GO:0006355
Vivi1g02944 232 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Vivi1g02944 232 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 150 IPR045174 GO:0003700|GO:0006355
Vivi1g02944 232 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02944 Vivi-Chr1 64209374 64210841 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02944 1 232 C2C2-Dof Transcription Factor Family AT3G50410 48.837 3.72e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi1g02944 zf-Dof 9.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02944 - - cam:101488684 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02944 1 64209374 64210841 Vivi1g02944 1 64209374 64210841 ECH