Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02908 ATGATCCCAGAACTCTTTGGTAATGGTGCTAGTGAAAGAAACTACTCTTCCATTAATGGAGGAGGACTTGGAGGAGGACTTTTACTTCAACCAACAACAACAACACAGTCTCCTTCTTCTCTTCCTTCTTCTTCTCCTTGTCCATCTTCCACAACCACCATCCCCACCACCACCACCACTTCCACACCAGCAACCACCCCCTCATCTGAAAACCAACAAAGTCTGAGGTGTCCACGATGTGATTCATCCAACACCAAGTTCTGCTACTACAACAACTACAACCTCACTCAGCCTCGCCATTTCTGCAAAACATGCCGTCGTTACTGGACAAAAGGCGGCGCTTTACGTAACGTCCCCATCGGAGGAGGCTGCCGGAAAAACAGAAACATTGGCGCGTCGAACAACTCGGCAAAAACATCAGTAAACAAGATGAAGACAGTTGCATCTGAGTTTATAGGAAGGTCAGGTGGTCAAGGGTTTGATCTTGAACATGTTGTTCCACCACCAAGCCAAATCCTCTGGGGCTCTCCACAAAATTCTCATCTACTTTCCTTGCTAAGATCTAACCAAAACCCTAACCCTAACCTTGTTAAGGAAGAAGGGAATAACTTATTAGGGTCCCATGTTTCTCACATGATGAGTTCTCAGCCGTTGGTTTCATCAAATGGCTATGATGGTATTGGACATGTTCTATGCAACCCATTTTGGAGAAACAATCATGATCAAACTCAACATTTACAAAACGGTGGCTTTGTACTTGGGGAACAACATCCACAACATCAGCATCAAAGCAGTGGAATCCAAGAACTTTACCAGAAGCTAAGGTCTTCAACATCATCATCATCAGGTAATAATTATTGTAGTGAGATTTCATCTTCACCAACAGTGTTACTAGGGAACGTGGCTTCTAATACCTCTACTATATCAAACATTTTGGAGACAACTTCAGTTCCTGCTGCTGAATTAGGGTACTGGAATCCAATTCCAACCCTTACTTGGTCTGATCTTCCAACCACCAATGGTGCATATATCCATAACAGTAATAATTAA 1050 0.4333 MIPELFGNGASERNYSSINGGGLGGGLLLQPTTTTQSPSSLPSSSPCPSSTTTIPTTTTTSTPATTPSSENQQSLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNRNIGASNNSAKTSVNKMKTVASEFIGRSGGQGFDLEHVVPPPSQILWGSPQNSHLLSLLRSNQNPNPNLVKEEGNNLLGSHVSHMMSSQPLVSSNGYDGIGHVLCNPFWRNNHDQTQHLQNGGFVLGEQHPQHQHQSSGIQELYQKLRSSTSSSSGNNYCSEISSSPTVLLGNVASNTSTISNILETTSVPAAELGYWNPIPTLTWSDLPTTNGAYIHNSNN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02908 349 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677|GO:0006355
Vivi1g02908 349 Pfam Dof domain, zinc finger 73 129 IPR003851 GO:0003677|GO:0006355
Vivi1g02908 349 MobiDBLite consensus disorder prediction 26 77 - -
Vivi1g02908 349 MobiDBLite consensus disorder prediction 28 77 - -
Vivi1g02908 349 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677|GO:0006355
Vivi1g02908 349 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 65 271 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02908 Vivi-Chr1 63495411 63497004 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02908 37 139 C2C2-Dof Transcription Factor Family AT5G65590 58.252 4.09e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi1g02908 zf-Dof 4.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02908 - - psat:127074489 574.704