Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g01813 ATGCAAGAAATACATTCCATCGGTGGCGGAGGCACCAGGTTCTTCGGCGGCGGAGGCGGCGACCGGAGACTCAGGCCACATCTCAACAACAACCCGAACAACAATAACCAAGCCTTGAACTGTCCTCGCTGCGACTCCATCAATACCAAATTCTGTTACTACAATAACTACAACCTCTCTCAGCCTCGTCATTTCTGCAAAAACTGCCGTCGTTACTGGACCAAAGGCGGCGTCCTCCGTAACGTCCCTGTCGGTGGCGGTTGCCGTAAATCCAAACGCTCAAGCAAGCCGAAAAACTCTTCCTCTTCGGAAATCGCTGATTTGCCGACTACTCCACCGGAGAACAAATCGAACTCTCACTCCAGCAGCGAGAGTTCGAGCCTCACCGCCGCGGCGGTAACTGATTCCGTCTCAGAACCAACACCACCGAAAATCAACACTGGTTTAGAGAATGATTCACTGGAACAACAAGGAGCAGCAGATTGCGGTATTTTCTCAGAGATTGCAACGTTCACAAGCTTGATCACTTCCTCCAACGATACATTACCGTTTGAATTCAGTAACGGCAACAGTAACGGTAACTGTAACGTTAACGGTTTTGGCGACGCATCGTCGTTTAACTGGCAACATCAGAAGGTGATGACCGTTACCGGCGATCAGCCTCATCCACAAGAAGATGCATTGAAGTTGTTACCGGAGAATCTCGGTACTGGTGTTGGCTCATCTGGATCGTTGATGGACCACGGTATTGATTTCTCTGTGCTGCAGAGTAAAACAAGCAACGGTGGATTTGGATCGTTGGATTGGCATGGTGCAGATCAAGGTTTGTTCGATCTTCCTAACACCGTTGATCATGGTTACTGGAATCACACTCAATGGTCTGATCATGATCAGGATCAGGGTCAGGATCATTCCAATCTCTTTCATATTCCATGA 936 0.4882 MQEIHSIGGGGTRFFGGGGGDRRLRPHLNNNPNNNNQALNCPRCDSINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSSKPKNSSSSEIADLPTTPPENKSNSHSSSESSSLTAAAVTDSVSEPTPPKINTGLENDSLEQQGAADCGIFSEIATFTSLITSSNDTLPFEFSNGNSNGNCNVNGFGDASSFNWQHQKVMTVTGDQPHPQEDALKLLPENLGTGVGSSGSLMDHGIDFSVLQSKTSNGGFGSLDWHGADQGLFDLPNTVDHGYWNHTQWSDHDQDQGQDHSNLFHIP 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g01813 311 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 32 199 IPR045174 GO:0003700|GO:0006355
Vivi1g01813 311 MobiDBLite consensus disorder prediction 84 150 - -
Vivi1g01813 311 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Vivi1g01813 311 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Vivi1g01813 311 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Vivi1g01813 311 MobiDBLite consensus disorder prediction 1 39 - -
Vivi1g01813 311 MobiDBLite consensus disorder prediction 98 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g01813 Vivi-Chr1 38788036 38789173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g01813 21 300 C2C2-Dof Transcription Factor Family AT5G60850 41.042 1.21e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi1g01813 zf-Dof 5.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g01813 - - mtr:25493917 410.994