Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00850 ATGGGCACCCCTGACAAGAAGATATCTGATATTGTTGATGTAGTTAGGTCCTGGATCCCTCGAAGGATTGAGCCACCAAATGTGTCGAGGGACTTTTGGATGCCAGATCAAAGCTGTAGGGTATGCTACGAGTGTGATTCACATTTCACTGTATTCAACCGTAGGCATCACTGTAGAATCTGTGGTCGTGTTTTTTGTGCAAAATGTACTGCCAATTCTGTTCCTGCGTCTTTGCATGATCCAAATACTACTCGTGAAGATTGGGAAAGGATTAGGGTTTGTAACTATTGCTTTAAACAATGGGAGAAGGGAGTAGCAGCAGTTGATAATGGCACTCCCTCAGCCATTCCTTGTCTCAGCCCTTCACCTTCTTCAACAAGCTTGGTCAGCTCTAAGTCTAGTTGCACCTGTCACAGTAGTAGCAGCACTGCCGGTTCAGTTCCTTGTTCAACCGGATCTTATCAGTGTGTGCCTTGTAGTCCACATCAATCTACCCAATTGAATCTGATAATGGATGAGCAAGAAAATTTAAATTCCGAGAGGAGCCCTAATGCCTCTCTGGCTGTAGAGAATTTGAATTCTAACCAATATGGCTATTGCTTCAACAGGAGTGACGACGAGGATGATGATTATGGTGTTTACCATTCTGATACAGAATCAAGACCTTATTCTCGCATCAATGACTATGACGACCTAGTTAACATTCAGGGGATTGACCGTGTCTATGGACCACATATAAGGCATTCTGATGGAGATAACAGTCAGGAAAGAAGTTCGAATTGTGTAGAGGCACCACAAAATCTTGAGCTAGAAGGTGCAGATGGAGTTCAAGCACTGGGAAAAGAAGCTGATGAGCATGATCATACTGATGGATGCGAAACATCTCCCTATCAGGAGGAGGCTAATAATTTGGAGCCTGTGGATTTTGAGAATAACGGGCTTCTGTGGCTACCTCCAGAGGCGGAGGATGAAGAGGATGATAAAGAAGCTGTTCTTTATGATGATGATGAAGATGAAGGTAGTACTGGAGAATGGGGATATCTACGTTCCTCCTCTAGCTTTGGTTCTGGAGAATTTAGCAGCAGAGATAAATCAGGTGATAATAGGAAGGCCATGAAGAATGTTGTGGAAGGGCATTTTAGAGCTCTGGTAGCTCAGCTTTTGCAGGTGGAAAGCCTAACTGTTGATGACGACGGAAAAGAGAGTTGGTTGGATATAATTACCACTCTGTCTTGGGAAGCTGCAACCCTTCTGAAGCCTGATACGAGCAGGGGTGGAGGTATGGATCCTGGTGGATATGTAAAGGTTAAATGCATAGCTTGTGGGCATCGAAATGAAAGTTTGGTGGTTAAAGGCATAGTTTGTAAGAAGAATGTGGCTCATCGGCGAATGACATCAAAAATTGATAAACCACGTTTTCTAATACTTGGAGGTGCTTTGGAGTATCAACGTGTTTCTAACCAGTTATCAAGTGTTGATACATTGTTACAGCAGGAGATGGACCATTTGAAGATGGCAGTTGCGAAGATTGATGCTCATCACCCCAGTGTTCTTTTGGTAGAGAAGTCAGTATCTCGTTATGCTCAAGAATACCTTCTTGCTAAAGACATATCTCTTGTTCTGAATATCAAAAGGCCACTTTTAGAACGTATTGCCCGTTGTACCGGGGCACAGATCGTCCCTTCAATTGATCATTTGACCTCCCCAAAACTGGGTTACTGTGAAAAGTTCCACGTCGACAAGTTCTTTGAGGAACATGGTAGTGCTGGACAAATTGGGAAAAAATCAACGAAAACTTTGATGTTCTTTGAGGATTGCCCGAAACCGCTGGGTTGCACGATCTTGCTCAAAGGATCAAATGGGGATGAGTTGAAGAAGGTGAAACATGTAGTCCAATATGGAGTCTTTGCAGCCTATCATTTGGCGCTGGAAACATCTTTTCTGGCAGATGAAGGTGCTTCACCCCTAGAGCTTCCCTTAAAATCTCCCATAACCGTTGCACTACCTGATAAACCTTCTAGTATTGTAAAATCCATTTCAACAATCCCTGGATATTCTGCTGTCACTGGTAGAGAGCATCAGGGTGCTGGAACTAACAAAGAAGTACTGAAATGTAATGATGGGTACAAGGCACATAGAACCTCATCTTGCTGCAGTGGATCCATTGAAAGATCACTGGTGGGTGAACCTATCAACAGTGTTGCTTGTGAGAAGGATGGCAAAGAACGTCCCAAGGAATCTGTACATTACAGACAAGATGAAGGAACAAAGACAATGATACGCGCTGATCTTATTTCAGATTTCTTTGGCACCTTTGAGCCTTCCGGGAGAGATGGCAATAACCACATCAAAGCTGTAGCACTGGCTTCAAATCTAGGAGCTGATCCCGAGTCACCTATTGTAAAACATGATGATGACAATAATTTTGATAATGACATGATACATTCACAAGAAGATTTTCCTCCCTCAACTTCCGACCATCAGAGTATTTTGGTCTTCTTATCAACACGTTGTGTGTGGAAAGGAACTGTTTGTGAAAGGTCCCATCTTGTGAGAATTAAATACTATGGAAGCTCCGATAAGCCTTTGGGTCGATTTTTGAGAGATCAACTATTTGATCAGAGTTACACTTGCCGCTCATGTGAAATGCCACCGGAAGCTCATGTTCATTGTTATACTCATAGGCAAGGGAGCCTGACAATTTCTGTTAAGAAACTATCTGAGTTTCCTTTACCAGGGGAAAGGGAAGGTAAAATCTGGATGTGGCACAGGTGCCTGAAATGTCCTCGTGTAAATGGTTTTCCTCCTGCCACACGGAGAGTAGTTATGTCTGATGCGGCCTGGGGCCTATCCTTTGGGAAATTCTTAGAACTGAGTTTCTCAAATCATGCAGCAGCAAGCAGGGTTGCAAATTGTGGTCATTCTCTCCACAGAGACTGTTTAAGATTCTACGGATTTGGGAAGATGGTTGCCTGCTTTCGCTATGCTTCAATTGACCTTCATTCTGTTTATCTTCCCCCATCTAAACTAGAATTCAACTGTGATGGTCAGGACTGGCTACAGAAAGAAGTAGATGAGGTACATAACAAGGCTGAAATACTGTTTAGTGAAGTGTGCAACGCTCTAAATCAAATTTCAGAGAAGTTTTCAGGTTATGTGCTGCAGGAAGGTGGAAATACAGTTGCAGATTTTAGGCATTTGATTGCTGAACTTGAAGGAATGATGCAGAAAGAGAAAGAAGAACTTGAGGAATTGTTACAAAAGTTTCTGCATAAAGAAGCCAAAACTGGCGGACTCATGGTTGATATTCTAGAGCTCTGTAAATTGCGCCGGCATATCCTTATTCTTTCTTATGTTTGGGACCAGCGCTTGGTATATGCATCCAATCAAAGTAAAATGACTTTTTCACAAGATTCAAGGAACTCCTATCAGAAAGAGAAATCAATTGGCTCTAAGGAAAAGGTTGTTGATACAGATGTGGCCACAAGGCCTGCAAGAGGCCATAGCAGTTCTGATTTTTCTCTTTTGAAAACAAAACCTAATGGAAACCTTGATTTAGAAAACACTAGCCACCTTAGCCAGTCTGGTGAAATGATCAAAGGTGAGGACAAAAGTAAAGACACCGCCCATGTTAAGTTTGATCTTTCCCTCTCTCCTGGCACAAATATCAATGATAAATCTAACTATTCGGAGTTTGGAGGATCTGCACGGAGGAGATCTTCGTCTGAAGGAGGGTCTCGTAATGTGGCCGATTTATCTGATACCCTTGATGCAGCATGGACTGGTGAAACTCACCCAGAAAATGAACTATACAAGGAAAATGGTTGTCATGTTTCTGATATGGAAGCTGCGATGGTTCAATCACCTACGGAAAAAGTTACTGCAAAATCCAATCTTGATAACTATACTGCTGATATAGGTGGGATTGAAACAGGCTACACTCATGACTCTAGATTGCATTCCAAAGGACTTGATATTAGATGGGCTGGGATGCCTTTTGCTAATTCATGCTCTGTAAACAAAACTTCAGCCTTCAATACACAGAAGCTTGTTGATTACAACTTTGTCCACATTTTATCATTTCGAGAGTTGGACCGCCAGACTGGTGCTAGACTGCTTCTGCCTGCTGGCATTAATGATACAATAGTGCCTGTCTATGATGATGAACCTACTAGTGTTATAGCACACGTGCTTGTATCAAAAGATTATCATATCCAGATGTCAGAATCTGATAGACCTAAAGACAGTTTAGACAGTTCAGTTTCTTTACCACTATTTGACTCTACGAGCCTACTTTCTCTCAACTCTTTTGATGAGACTATTACTAATAGTTACAGATCTTCTGATGAGAGCACGACGTTATCCACATCAGGGTCTAGAAGTTCACTGCTTGGGGATTCATCCCTGTACTCAAAGGATTTTCATGCAAGGGTTTCTTTTAATGATGACAGCTCGCTTGGAAAAGTGAAATATACTGTAACTTGCTACTATGCAAAGAGATTTGAGGCTCTAAGAAGAACTTGTTGCCCTACTGAACTAGATTTTGTGCGGTCCCTTAGCCGTTGTAAAAAGTGGGGGGCTCAGGGAGGAAAGAGTAATGTTTTCTTTGCAAAGACTCTCGATGATAGATTTGTTGTCAAGCAGGTTACAAAGACAGAGCTTGAATCATTTATCAAGGTTGCACCAGCTTATTTTAAATATTTATCCGAGTCAATCAATACAGGAAGCCCAACCTGTCTAGCAAAGATCTTGGGCATTTATCAGGTAACATCAAAGCATCTCAAAGGAGGGAAGGAGACAAAAATGGATGTTCTTGTCATGGAAAATCTTCTTTATCGGCGGAACATCAGGCGGCTTTATGACCTCAAAGGTTCTTCTAGATCAAGGTACAATCCAGATACAAGTGGGAGCAATAAAGTTCTTCTGGATCAGAATCTCATTGAAGCTATGCCAACCTCTCCAATATTTGTTGGGAACAAGGCAAAACGGCTTCTTGAGAGGGCCGTGTGGAATGATACTGCATTCCTTGCTTCAATATATGTGATGGACTACTCATTGCTGGTTGGCGTGGACGAGGAGAAGCATGAGCTGGTTTTAGGCATCATTGATTTTATGAGGCAATATACATGGGACAAGCACCTTGAAACCTGGGTTAAGACCTCGGGCATTCTTGGTGGACCCAAGAATACTTCTCCAACTGTTATATCACCACAGCAGTACAAGAAACGGTTCAGAAAAGCAATGAGCTTATATTTTCTTATGGTGCCGGATCAATGGTCTCCTCCAAGCTTACAAACTAGTGAATCTCAAACCGACCTTTGTGACGAAAATTCATGA 5337 0.4223 MGTPDKKISDIVDVVRSWIPRRIEPPNVSRDFWMPDQSCRVCYECDSHFTVFNRRHHCRICGRVFCAKCTANSVPASLHDPNTTREDWERIRVCNYCFKQWEKGVAAVDNGTPSAIPCLSPSPSSTSLVSSKSSCTCHSSSSTAGSVPCSTGSYQCVPCSPHQSTQLNLIMDEQENLNSERSPNASLAVENLNSNQYGYCFNRSDDEDDDYGVYHSDTESRPYSRINDYDDLVNIQGIDRVYGPHIRHSDGDNSQERSSNCVEAPQNLELEGADGVQALGKEADEHDHTDGCETSPYQEEANNLEPVDFENNGLLWLPPEAEDEEDDKEAVLYDDDEDEGSTGEWGYLRSSSSFGSGEFSSRDKSGDNRKAMKNVVEGHFRALVAQLLQVESLTVDDDGKESWLDIITTLSWEAATLLKPDTSRGGGMDPGGYVKVKCIACGHRNESLVVKGIVCKKNVAHRRMTSKIDKPRFLILGGALEYQRVSNQLSSVDTLLQQEMDHLKMAVAKIDAHHPSVLLVEKSVSRYAQEYLLAKDISLVLNIKRPLLERIARCTGAQIVPSIDHLTSPKLGYCEKFHVDKFFEEHGSAGQIGKKSTKTLMFFEDCPKPLGCTILLKGSNGDELKKVKHVVQYGVFAAYHLALETSFLADEGASPLELPLKSPITVALPDKPSSIVKSISTIPGYSAVTGREHQGAGTNKEVLKCNDGYKAHRTSSCCSGSIERSLVGEPINSVACEKDGKERPKESVHYRQDEGTKTMIRADLISDFFGTFEPSGRDGNNHIKAVALASNLGADPESPIVKHDDDNNFDNDMIHSQEDFPPSTSDHQSILVFLSTRCVWKGTVCERSHLVRIKYYGSSDKPLGRFLRDQLFDQSYTCRSCEMPPEAHVHCYTHRQGSLTISVKKLSEFPLPGEREGKIWMWHRCLKCPRVNGFPPATRRVVMSDAAWGLSFGKFLELSFSNHAAASRVANCGHSLHRDCLRFYGFGKMVACFRYASIDLHSVYLPPSKLEFNCDGQDWLQKEVDEVHNKAEILFSEVCNALNQISEKFSGYVLQEGGNTVADFRHLIAELEGMMQKEKEELEELLQKFLHKEAKTGGLMVDILELCKLRRHILILSYVWDQRLVYASNQSKMTFSQDSRNSYQKEKSIGSKEKVVDTDVATRPARGHSSSDFSLLKTKPNGNLDLENTSHLSQSGEMIKGEDKSKDTAHVKFDLSLSPGTNINDKSNYSEFGGSARRRSSSEGGSRNVADLSDTLDAAWTGETHPENELYKENGCHVSDMEAAMVQSPTEKVTAKSNLDNYTADIGGIETGYTHDSRLHSKGLDIRWAGMPFANSCSVNKTSAFNTQKLVDYNFVHILSFRELDRQTGARLLLPAGINDTIVPVYDDEPTSVIAHVLVSKDYHIQMSESDRPKDSLDSSVSLPLFDSTSLLSLNSFDETITNSYRSSDESTTLSTSGSRSSLLGDSSLYSKDFHARVSFNDDSSLGKVKYTVTCYYAKRFEALRRTCCPTELDFVRSLSRCKKWGAQGGKSNVFFAKTLDDRFVVKQVTKTELESFIKVAPAYFKYLSESINTGSPTCLAKILGIYQVTSKHLKGGKETKMDVLVMENLLYRRNIRRLYDLKGSSRSRYNPDTSGSNKVLLDQNLIEAMPTSPIFVGNKAKRLLERAVWNDTAFLASIYVMDYSLLVGVDEEKHELVLGIIDFMRQYTWDKHLETWVKTSGILGGPKNTSPTVISPQQYKKRFRKAMSLYFLMVPDQWSPPSLQTSESQTDLCDENS 1778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00850 1778 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 108 IPR013083 -
Vivi1g00850 1778 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 23 1765 - -
Vivi1g00850 1778 FunFam 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B 1454 1609 - -
Vivi1g00850 1778 CDD PIPKc_PIKfyve 1489 1752 IPR044769 GO:0000285
Vivi1g00850 1778 MobiDBLite consensus disorder prediction 1224 1250 - -
Vivi1g00850 1778 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1528 1694 IPR002498 GO:0016307|GO:0046488
Vivi1g00850 1778 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 1446 1609 IPR027484 -
Vivi1g00850 1778 Gene3D - 1611 1753 - -
Vivi1g00850 1778 MobiDBLite consensus disorder prediction 1145 1161 - -
Vivi1g00850 1778 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 36 102 IPR017455 -
Vivi1g00850 1778 MobiDBLite consensus disorder prediction 334 368 - -
Vivi1g00850 1778 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase isoform X1 445 618 - -
Vivi1g00850 1778 Pfam TCP-1/cpn60 chaperonin family 386 649 IPR002423 GO:0005524
Vivi1g00850 1778 SUPERFAMILY FYVE/PHD zinc finger 31 104 IPR011011 -
Vivi1g00850 1778 Coils Coil 1061 1095 - -
Vivi1g00850 1778 SUPERFAMILY SAICAR synthase-like 1480 1752 - -
Vivi1g00850 1778 Pfam FYVE zinc finger 33 102 IPR000306 GO:0046872
Vivi1g00850 1778 Gene3D GroEL 445 618 IPR027409 -
Vivi1g00850 1778 SMART PIPK_2 1462 1753 IPR002498 GO:0016307|GO:0046488
Vivi1g00850 1778 SMART fyve_4 28 103 IPR000306 GO:0046872
Vivi1g00850 1778 SUPERFAMILY GroEL apical domain-like 446 618 IPR027409 -
Vivi1g00850 1778 CDD Fab1_TCP 381 652 - -
Vivi1g00850 1778 MobiDBLite consensus disorder prediction 1224 1249 - -
Vivi1g00850 1778 MobiDBLite consensus disorder prediction 345 361 - -
Vivi1g00850 1778 FunFam 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B 24 109 - -
Vivi1g00850 1778 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1429 1752 IPR002498 GO:0016307|GO:0046488
Vivi1g00850 1778 MobiDBLite consensus disorder prediction 1164 1196 - -
Vivi1g00850 1778 MobiDBLite consensus disorder prediction 1136 1205 - -
Vivi1g00850 1778 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 1611 1753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00850 Vivi-Chr1 18238888 18248429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00850 1 1778 EF-hand Containing Proteins AT3G14270 56.489 0.0 1902
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00850 1 18238888 18248429 Vivi1g00850 1 18238888 18248429 ECH
Vivi1g00850 1 18238888 18248429 Vivi5g03850 5 133228191 133235492 PCT