Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi190g00003 ATGGACACAACTCAGTGGGCACAGGGGAATATTGGGCTGGTTAAACAAATGGAAGGGTCAAAAGCTCCTATGATAGAGAGAAGAGCAAGGCCACAAAAAGATCAAGCTTTGAACTGTCCACGGTGCAATTCAACCAACACTAAATTCTGTTACTACAATAACTACAGTCTCTCTCAACCAAGGTACTTCTGCAAAACCTGTAGAAGGTATTGGACTGAAGGTGGTTCTTTGAGAAATGTGCCTGTAGGTGGTGGTTCAAGAAAAAACAAAAGATCATCGCCGTCACCTTCACCTTCGATCTCGCAACAACAACCTCCATCATCATCTATAACAAAGAATATTATCGTTCCGGATCTTACTCAATCCGCTTCTCAGAACCCTAAGATCCATCAAGGACAAGATCTTAACCTAGCTTATCCACCACCACAAACTGAAGATAGTTACAGCACCATATCTAAATTCATTGAACTTCCTTACACGACTGATCAAGAAAAAACTCGTAATTCATCGTCGTCGCCGCTTTCTGCTATGGAGTTGCTCAAAACTGGGATCGCTGCTTCTTCATCAAGGGGTTTGAATTCCTTTATGCCTATGTCATTATCTGAGTCTAGTGCAATGTATAATTCAACTGGTTTCGCTTTGCAAGATTTTAAGCCTGGTCTTAATTTTAGTTTAGAGGGATTCGAGAATGGTTATGGTGGTTTACAAGGGATGAATCAAGAGAGTTCTGGTGGTGGAGGTGGTGGTGGTGCAAGGATGTTGTTTCCTGTTGTGGAGGAATTGAACAATAATAATAATAACAATAAGCAACAACAACAAGTTCCAAATAGTGGTGAGTTTGAACAACATCAACATCAGCAGAATAATAGAAGCCAAGGTGATTCAACTGGTTATTGGAATGGTATGTTAGGTGGTGGATCATGGTAA 927 0.4078 MDTTQWAQGNIGLVKQMEGSKAPMIERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSPSPSPSISQQQPPSSSITKNIIVPDLTQSASQNPKIHQGQDLNLAYPPPQTEDSYSTISKFIELPYTTDQEKTRNSSSSPLSAMELLKTGIAASSSRGLNSFMPMSLSESSAMYNSTGFALQDFKPGLNFSLEGFENGYGGLQGMNQESSGGGGGGGARMLFPVVEELNNNNNNNKQQQQVPNSGEFEQHQHQQNNRSQGDSTGYWNGMLGGGSW 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi190g00003 308 MobiDBLite consensus disorder prediction 263 308 - -
Vivi190g00003 308 MobiDBLite consensus disorder prediction 86 110 - -
Vivi190g00003 308 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Vivi190g00003 308 MobiDBLite consensus disorder prediction 124 144 - -
Vivi190g00003 308 MobiDBLite consensus disorder prediction 78 110 - -
Vivi190g00003 308 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Vivi190g00003 308 Pfam Dof domain, zinc finger 34 91 IPR003851 GO:0003677|GO:0006355
Vivi190g00003 308 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 262 IPR045174 GO:0003700|GO:0006355
Vivi190g00003 308 MobiDBLite consensus disorder prediction 263 298 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi190g00003 22 308 C2C2-Dof Transcription Factor Family AT3G61850 41.254 3.71e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi190g00003 zf-Dof 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi190g00003 - - tpra:123909226 447.203