Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi179g00023 ATGGCTGAAGAGAATCAAGCGATTAAGCTCTTTGGTGCAACGATTAAACTACATGATGTTGAAACAAAAGAAAGAGAAGGAGATGAAGATCCGACGGTGGAGAAGAGATCAGAGAAGATCATACCGTGTCCAAGATGCAAGAGCATGGAGACTAAATTCTGTTATTTCAACAACTACAACGTGAATCAGCCCAGACATTTCTGTAAGAGCTGTCAGAGGTATTGGACGGCTGGTGGAGCCCTCCGTAACGTACCAGTTGGAGCCGGTCGTCGGAAGGCTAAGCCGCCGGGACATGAAGATAGCGGTTCAAATTCGCCGGAGAGTTGTTTTTATGAAGGTGATTCTGATGATCATGGACATCAGTGGCACGTTGAAACGGTTCCTGAGAGTGGTTTCCGGGAAGGTTTTTCCGGTAAACGGCGGAGGAAGAATTCAGGTTGTTATTCGTTAGCTATGATGTAA 462 0.461 MAEENQAIKLFGATIKLHDVETKEREGDEDPTVEKRSEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVPVGAGRRKAKPPGHEDSGSNSPESCFYEGDSDDHGHQWHVETVPESGFREGFSGKRRRKNSGCYSLAMM 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi179g00023 153 PANTHER CYCLIC DOF FACTOR 2 24 98 IPR045174 GO:0003700|GO:0006355
Vivi179g00023 153 Pfam Dof domain, zinc finger 39 94 IPR003851 GO:0003677|GO:0006355
Vivi179g00023 153 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Vivi179g00023 153 MobiDBLite consensus disorder prediction 85 112 - -
Vivi179g00023 153 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi179g00023 3 149 C2C2-Dof Transcription Factor Family AT1G29160 50.581 4.83e-49 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi179g00023 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi179g00023 - - dzi:111278619 192.2