Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1454g00007 ATGCAGAAAACTACAATATTCCTCACACTCCTCTTCCACCTTTTTTCAACCATAACCTCAAAATCAACAATCGAACCATGCACAAACTCCGACTCATGCAACGCTCTACTCGGCTACACCCTCTACACAGACCTCAAAGTCTCCGAACTCTCCTCCCTCTTCCAAATCGACCCTATCTCCCTCCTAACCGCCAATGCCATCGACATCTCTTACCCCGACGTGGAACACCACATCCTCCCTTCCAAACTCTTCCTCAAAATCCCAATCTCATGCTCCTGTGTTGACGGGATTCGCAAATCCGTTTCCACGAACTACAAAATTCGGCCTTCGGATACTCTCTCCACCATTGCTGACTCTGTTTATGGTGGTTTGGTTTCTTCTGACCAGCTCAAAGAGGCTAACTCTATTTCTGATCCGTCTGTTCTTGATGTGGGACAGAGCCTTGTTGTTCCGCTTCCTTGTACTTGTTTCAATGGCTCTGATAATGCTTTGCCTGCTATTTATTTGTCGTATGTTGTTCAGCCTCTTGATAGTTTGAGTTATATTGCGGCGAGGTATTTTACTACTCTTACTGATTTGATGAATGTTAATGCTATGGGGAGTACTTCTATCTCTGATGGTGATATTCTTGCTATTCCTATCCCGGCATGTGCTTCAAATTTTCCGAAATATGCTTCTGATTTCGGCTTGCTTGTTCCTAATGGAAGTTATGCCATTACAGCAGGCCATTGTGTGCAATGTAGCTGTGGACCCCGAAACTTAAATTTGTACTGTATGCCGGCTTCTCTAGCTGTTTCTTGCTCCAGCATGCAATGTAAAAGCAGCAATCTTATGCTTGGCAATGTTACCGTGCAACAGACTGGTGGTGGTTGTAATGTGACTTCTTGCAGTTATGATGGTCTTGTTAACGGCACCATAGCGACAATGTTGACCCCATCTCTTCAGCCTCGATGCCCAGGGACACAGCAATTTCCTCCTCTTATCGCCCCACCTACAACTGTTACGAGAGAATCAGTATTTGCACCGGCACCCTCACCATCATCACTGTTCGATGGAACTGATGGGAGATCACCCAAACCCTCTGTGGTGCCTTCAACAGGATTTACTCCAGCTAATGGCCCTGTCAGTGGAATTTCTTCTGGTGCTTCTGCTGCATGCTCCTTGGTGAAACCATTATCCGCTATGGCAGTTCCACTTGTGTTATTACTAGTCAAGTTGATGATCCCTGTAGCATTGTAA 1239 0.456 MQKTTIFLTLLFHLFSTITSKSTIEPCTNSDSCNALLGYTLYTDLKVSELSSLFQIDPISLLTANAIDISYPDVEHHILPSKLFLKIPISCSCVDGIRKSVSTNYKIRPSDTLSTIADSVYGGLVSSDQLKEANSISDPSVLDVGQSLVVPLPCTCFNGSDNALPAIYLSYVVQPLDSLSYIAARYFTTLTDLMNVNAMGSTSISDGDILAIPIPACASNFPKYASDFGLLVPNGSYAITAGHCVQCSCGPRNLNLYCMPASLAVSCSSMQCKSSNLMLGNVTVQQTGGGCNVTSCSYDGLVNGTIATMLTPSLQPRCPGTQQFPPLIAPPTTVTRESVFAPAPSPSSLFDGTDGRSPKPSVVPSTGFTPANGPVSGISSGASAACSLVKPLSAMAVPLVLLLVKLMIPVAL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1454g00007 412 CDD LysM 105 150 IPR018392 -
Vivi1454g00007 412 SUPERFAMILY LysM domain 104 152 IPR036779 -
Vivi1454g00007 412 ProSiteProfiles LysM domain profile. 169 212 IPR018392 -
Vivi1454g00007 412 SUPERFAMILY LysM domain 169 214 IPR036779 -
Vivi1454g00007 412 CDD LysM 170 212 IPR018392 -
Vivi1454g00007 412 ProSiteProfiles LysM domain profile. 103 150 IPR018392 -
Vivi1454g00007 412 Pfam LysM domain 171 213 IPR018392 -
Vivi1454g00007 412 Pfam LysM domain 105 151 IPR018392 -
Vivi1454g00007 412 Gene3D LysM domain 99 159 IPR036779 -
Vivi1454g00007 412 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 8 322 - -
Vivi1454g00007 412 SMART LysM_2 104 151 IPR018392 -
Vivi1454g00007 412 SMART LysM_2 170 213 IPR018392 -
Vivi1454g00007 412 Gene3D LysM domain 160 221 IPR036779 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1454g00007 6 387 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 69.251 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1454g00007 - - gmx:100808966 671.003